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Imputation scenarios used in the study
| Imputation | Software | Pedigree information | Nellore genotypes | Method | |
|---|---|---|---|---|---|
| From | To | ||||
| 3K, 6K, 8K,15K, 20K | 50K | FImpute | Yes | Yes | One-step |
| No | |||||
| No | Yes | ||||
| No | |||||
| Beagle | No | Yes | |||
| No | |||||
| 3K, 6K, 8K,15K, 20K | 777K | FImpute | Yes | Yes | One-step |
| No | |||||
| Two-step | |||||
| Beagle | No | ||||
| 50K, 90iK, 90tK | 777K | FImpute | Yes | Yes | One-step |
| No | |||||
| Beagle | No | ||||
