TABLE 1.
Primer use and name | DNA sequence, 5′ → 3′ | Nucleotide positions |
---|---|---|
Site-directed mutagenesisb | ||
PGHV174C-F | CTCGGCCTGCGCTGCGCGCTGCGCTC | 61,117–61,142 |
PGHA270C-F | CTACTTTTACCGCGCATGCGTGCGCCTCGGCGTGGC | 61,401–61,436 |
PGHA252C-F | CGGCGGCGCACTGTGCCGCCCTGGCC | 61,352–61,377 |
PGHA419C-F | GAGCTCACGCGGGCATGCCTCTCGCCGACGG | 61,849–61,879 |
PGHH251C-F | GCTGTCGGCGGCATGCGCGGCCGCCC | 61,347–61,372 |
PGHH251S-F | GCTGTCGGCGGCTAGCGCGGCCGCCC | 61,347–61,372 |
PGHL432C-F | CGAGCCCTTCAGCTGCCTCGACGTCCTCTCG | 61,890–61920 |
PGHA250C-F | GCCCAGCTGTCGGCATGCCACGCGGCCGCC | 61,342–61,371 |
PGHA250S-F | CCAGCTGTCGGCTAGCCACGCGGCCGC | 61,344–61,370 |
PGHA276C-F | CGCCTCGGCGTGTGCGCATTCGTCTTCTCCG | 61,423–61,453 |
PGHA253C-F | CGGCGCACGCGTGCGCCCTGGCCGC | 61,355–61,379 |
PGHA269C-F | CGTACTACTTTTACCGCTGCGCAGTGCGCCTCGGCG | 61,397–61,432 |
PGHA284C-F | CGTCTTCTCCGAGGCATGCCGCCGCGACCGGC | 61,443–61,474 |
PGHA284S-F | CTTCTCCGAGGCTAGCCGCCGCGACCG | 61,446–61,472 |
PGHS291C-F | GACCGGCGCGCCTGTGCACCGGCGCTCC | 61,468–61,495 |
PGHA250P-F | CAGCTGTCGGCGCCGCACGCGGCC | 61,345–61,368 |
PGHV298P-F | CGGCGCCGGCGCTCCTGAGGCCTGAGAGCGACGCGCGCC | 61,481–61,519 |
PGHV275P-F | GTGCGCCTCGGCCCGGCCGCCTTCG | 61,420–61,444 |
PGHK-DRDF | GGGAGACCCAAGCGTCTTCAAAGTTTGCCGTGCCC | (pcDNA3) |
PCR amplification and sequencing | ||
PGH-PSF | TTCACGTCGGAGATGGGG | 60,451–60,468 |
PGH-PSF2 | GGAAGCCCTTCGACCAG | 61,715–61,731 |
PGH-PSR | AGTTATGTCATCCAGCAGCC | 62,887–62,868 (r) |
PGH-PSR2 | GTCGAGCAGGCTGAAGG | 61,911–61,895 (r) |
PGH-WH3 | TGCACGAGAGCGACGACTACC | 61,319–61,339 |
PGHK-PSF | TGACGAGCGTAATGGCTGG | (pACYC177) |
PGHK-PSR | CGCGAGCCCATTTATACCC | (pACYC177) |
KanR-F | TCCGGATCCCGATTTATTCAACAAAGCCACG | (pACYC177) |
KanR-R | TTCGAATTCGCCAGTGTTACAACCAATTAACC | (pACYC177) |
T7 | TAATACGACTCACTATAGGG | (pcDNA3) |
SP6 | CTCTAGCATTTAGGTGACACTATAG | (pcDNA3) |
Artificial restriction sites used for cloning or fragment isolation are underlined. Altered nucleotides are printed in bold letters. Nucleotide positions refer to GenBank accession number BK001744.
Forward primer sequences are shown for site-directed mutagenesis. The corresponding reverse primers were exactly complementary.