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. 2014 Nov 12;89(2):1364–1376. doi: 10.1128/JVI.02765-14

TABLE 1.

Oligonucleotide primersa

Primer use and name DNA sequence, 5′ → 3′ Nucleotide positions
Site-directed mutagenesisb
    PGHV174C-F CTCGGCCTGCGCTGCGCGCTGCGCTC 61,117–61,142
    PGHA270C-F CTACTTTTACCGCGCATGCGTGCGCCTCGGCGTGGC 61,401–61,436
    PGHA252C-F CGGCGGCGCACTGTGCCGCCCTGGCC 61,352–61,377
    PGHA419C-F GAGCTCACGCGGGCATGCCTCTCGCCGACGG 61,849–61,879
    PGHH251C-F GCTGTCGGCGGCATGCGCGGCCGCCC 61,347–61,372
    PGHH251S-F GCTGTCGGCGGCTAGCGCGGCCGCCC 61,347–61,372
    PGHL432C-F CGAGCCCTTCAGCTGCCTCGACGTCCTCTCG 61,890–61920
    PGHA250C-F GCCCAGCTGTCGGCATGCCACGCGGCCGCC 61,342–61,371
    PGHA250S-F CCAGCTGTCGGCTAGCCACGCGGCCGC 61,344–61,370
    PGHA276C-F CGCCTCGGCGTGTGCGCATTCGTCTTCTCCG 61,423–61,453
    PGHA253C-F CGGCGCACGCGTGCGCCCTGGCCGC 61,355–61,379
    PGHA269C-F CGTACTACTTTTACCGCTGCGCAGTGCGCCTCGGCG 61,397–61,432
    PGHA284C-F CGTCTTCTCCGAGGCATGCCGCCGCGACCGGC 61,443–61,474
    PGHA284S-F CTTCTCCGAGGCTAGCCGCCGCGACCG 61,446–61,472
    PGHS291C-F GACCGGCGCGCCTGTGCACCGGCGCTCC 61,468–61,495
    PGHA250P-F CAGCTGTCGGCGCCGCACGCGGCC 61,345–61,368
    PGHV298P-F CGGCGCCGGCGCTCCTGAGGCCTGAGAGCGACGCGCGCC 61,481–61,519
    PGHV275P-F GTGCGCCTCGGCCCGGCCGCCTTCG 61,420–61,444
    PGHK-DRDF GGGAGACCCAAGCGTCTTCAAAGTTTGCCGTGCCC (pcDNA3)
PCR amplification and sequencing
    PGH-PSF TTCACGTCGGAGATGGGG 60,451–60,468
    PGH-PSF2 GGAAGCCCTTCGACCAG 61,715–61,731
    PGH-PSR AGTTATGTCATCCAGCAGCC 62,887–62,868 (r)
    PGH-PSR2 GTCGAGCAGGCTGAAGG 61,911–61,895 (r)
    PGH-WH3 TGCACGAGAGCGACGACTACC 61,319–61,339
    PGHK-PSF TGACGAGCGTAATGGCTGG (pACYC177)
    PGHK-PSR CGCGAGCCCATTTATACCC (pACYC177)
    KanR-F TCCGGATCCCGATTTATTCAACAAAGCCACG (pACYC177)
    KanR-R TTCGAATTCGCCAGTGTTACAACCAATTAACC (pACYC177)
    T7 TAATACGACTCACTATAGGG (pcDNA3)
    SP6 CTCTAGCATTTAGGTGACACTATAG (pcDNA3)
a

Artificial restriction sites used for cloning or fragment isolation are underlined. Altered nucleotides are printed in bold letters. Nucleotide positions refer to GenBank accession number BK001744.

b

Forward primer sequences are shown for site-directed mutagenesis. The corresponding reverse primers were exactly complementary.