Figure 1.

Comparison between HyLiTE and A) the results of the Cox et al. study [ 9 ] and B) PolyCat [ 14 ] for Epichloë fungal data. The black lines indicate the total number of reads that map to each gene, ranked by expression level. Green points indicate the number of reads assigned to homeologs by HyLiTE. Red points in A) indicate the number of reads assigned to homeologs in the Cox et al. study, while blue points in B) indicate the number of reads assigned to homeologs by PolyCat. The substantial improvement in read assignment by HyLiTE was obtained using its default settings.