TABLE 2.
Genome structures of newly identified tick-borne phleboviruses
| Virus | Strain | RNA segment | Length (no. of bases) | Genea | ORF positions (length)b | GenBank accession no. |
|---|---|---|---|---|---|---|
| Kismayo virus | LEIV 3641A | L | 6,341 | RdRp | 17–6,265 (6,249) | KM114252 |
| M | 3,329 | Gn and Gc | 20–3,247 (3,228) | KM114253 | ||
| S | 1,878 | N | 36–779 (744) | KM114254 | ||
| NSs | 1,857–919 (939) | |||||
| Silverwater virus | Can131 | L | >6,412c | RdRp | 17–6,379 (6,363) | KM114257 |
| M | 3,209 | Gn and Gc | 17–3,043 (3,027) | KM114255 | ||
| S | 1,732 | N | 29–793 (765) | KM114256 | ||
| NSs | 1,703–909 (795) | |||||
| Uukuniemi virus | Potepli 53 | L | 6,422 | RdRp | 17–6,325 (6,309) | KM114246 |
| M | 3,227 | Gn and Gc | 18–3,041 (3,024) | KM114247 | ||
| S | 1,720 | N | 35–796 (762) | KM114248 | ||
| NSs | 1,695–877 (819) | |||||
| SCOT FT 254 | L | 6,424 | RdRp | 17–6,325 (6,309) | KM114249 | |
| M | 3,289 | Gn and Gc | 18–3,041 (3,024) | KM114250 | ||
| S | 1,720 | N | 35–796 (762) | KM114251 | ||
| NSs | 1,695–877 (819) |
a
RdRp, RNA-dependent RNA polymerase; N, nucleocapsid protein; NSs, nonstructural protein. Gn and Gc are glycoproteins.
b
In cRNA, not including the stop codon.
c
The 5′ noncoding region is not sequenced fully.