Table 2.
Transposable elements that associate with NuMat *
| S. No. | TE (size in bp) | TE type | TEs mapping to MARs (%) | MAR size (bp) | Context, location of MAR in TE |
|---|---|---|---|---|---|
| 1 | F-element (4708) | LINE | 40 | 207 | 3′-UTR, 4483-4689 |
| 2 | jockey (5154) | LINE | 18 | 105 | 3′-UTR, 4904-5007 |
| 3 | Doc (4725) | LINE | 67 | 126 | 3′-UTR, 4469-4595 |
| 4 | opus (7521) | LTR | 13 | 291 | 3′-UTR, 6262-6606 |
| 5 | gypsy (7469) | LTR | 100 | 127 | LTR, 1-126 |
| 6 | HMS-Beagle (7062) | LTR | 45 | 300 | ORF, 831-1130 |
| 7 | Rt1b (5171) | LINE | 36 | 250 | 3′-UTR, 4910-5160 |
*Based on blast 2 sequence comparison of MAR sequence hit region with euchromatic genome sequence (> = 100 bp with > =90% similarity) carried out on Flybase Release 5.48 annotation including partial TEs.