Table 3. Pathway/Domain Terms Shared in Nine Independent Liver ccg Data Sets21−23,29,33−37.
| criteria | pathway | description |
|---|---|---|
| P < 0.05 in all | biological rhythms | SP_PIR_KEYWORDS |
| circadian rhythms | mmu04710 | |
| cytoplasm | SP_PIR_KEYWORDS | |
| endoplasmic reticuluma | SP_PIR_KEYWORDS, GO:0005783 | |
| lyase | SP_PIR_KEYWORDS | |
| phosphoproteina | SP_PIR_KEYWORDS | |
| steroid metabolic processa | GO:0008202 | |
| steroid hormone receptor | IPR001723 | |
| nuclear hormone receptor | IPR000536, IPR008946 | |
| zinc finger, nuclear hormone receptor type | IPR001628 | |
| basic leucine zipper | IPR011700 | |
| ZnF_C4 | SM00399 | |
| ligand-binding domain of hormone receptors | SM00430 | |
| binding site: substrate | UP_SEQ_FEATURE | |
| nucleotide bindinga | SP_PIR_KEYWORDS | |
| NADPa | SP_PIR_KEYWORDS | |
| nucleotide bindinga | GO:0000166 | |
| purine nucleotide binding | GO:0017076 | |
| ribonucleotide binding | GO:0032553 | |
| purine ribonucleotide binding | GO:0032555 | |
| P < 0.05 in eight | rhythmic process | GO:0048511 |
| circadian rhythm | GO:0007623 | |
| cofactor metabolic process | GO:0051186 | |
| ligand-dependent nuclear receptor activity | GO:004879 | |
| cytosol | GO:0005829 | |
| lipid biosynthetic process | GO:0008610 | |
| amine biosynthetic process | GO:0009309 | |
| regulation of cell death | GO:0010941 | |
| regulation of apoptosis | GO:0042981 | |
| regulation of programmed cell death | GO:0043067 | |
| endomembrane systema | GO:0012505 | |
| organelle membrane | GO:0031090 | |
| oxidation reductiona | GO:0055114 | |
| oxidoreducatsea | SP_PIR_KEYWORDS | |
| transferase | SP_PIR_KEYWORDS | |
| pyridoxal phosphate-dependent transferase | IPR015421 | |
| pyridoxal phosphate | SP_PIR_KEYWORDS | |
| Ubl conjucation | SP_PIR_KEYWORDS | |
| mutagenesis site | UP_SEQ_FEATURE | |
| BRLZ (basic leucine-zipper motif) | SM00338 | |
| NAD(P)-binding domain | IPR016040 |
a
Pathways/domains that were also enriched in proteome analyses.