Table 3.
Proportion of transplant recipients controls seropositive for betaHPV species2 1–3 by TMC6/8 variants, Seattle area SCOT cohort 1995–2010
| Species 1 (N = 141) | Species 2 (N = 129) | Species 3 (N = 61) | ||||
|---|---|---|---|---|---|---|
| Variant | n | % | n | % | n | % |
| rs12452890 | ||||||
| AA | 31 | 50.8 | 24 | 39.3 | 14 | 22.9 |
| AG | 76 | 56.7 | 63 | 47.0 | 32 | 23.9 |
| GG | 34 | 53.1 | 42 | 65.61 | 15 | 23.4 |
| rs16970842 | ||||||
| AA | 113 | 53.8 | 105 | 50.0 | 53 | 25.2 |
| AG/GG | 28 | 57.1 | 24 | 49.0 | 8 | 16.3 |
| rs16970849 | ||||||
| GG | 130 | 54.9 | 123 | 51.9 | 58 | 24.5 |
| GA/AA | 11 | 50.0 | 6 | 27.3 | 3 | 13.6 |
| rs2871647 | ||||||
| AA | 109 | 51.2 | 101 | 47.4 | 48 | 22.5 |
| AC/CC | 32 | 69.61 | 28 | 62.2 | 13 | 28.3 |
| rs383603 | ||||||
| CC | 81 | 52.9 | 78 | 51.0 | 33 | 21.6 |
| CG | 49 | 55.1 | 44 | 49.4 | 24 | 27.0 |
| GG | 11 | 64.7 | 7 | 41.2 | 4 | 23.5 |
| rs412611 | ||||||
| GG | 120 | 54.1 | 103 | 46.4 | 51 | 23.0 |
| GA | 21 | 56.8 | 26 | 70.31 | 10 | 27.0 |
| rs454138 | ||||||
| GG | 54 | 56.8 | 50 | 52.6 | 27 | 28.4 |
| GC | 65 | 53.3 | 53 | 43.4 | 24 | 19.7 |
| CC | 22 | 52.4 | 26 | 61.9 | 10 | 23.8 |
| rs7208422 | ||||||
| AA | 39 | 59.1 | 41 | 62.1 | 15 | 23.4 |
| AT | 70 | 54.3 | 63 | 48.8 | 32 | 24.8 |
| TT | 32 | 50.0 | 25 | 39.11 | 14 | 21.2 |
| rs7218589 | ||||||
| CC | 117 | 54.4 | 107 | 49.8 | 53 | 24.7 |
| CG/GG | 24 | 54.6 | 22 | 50.0 | 8 | 18.2 |
| rs8068430 | ||||||
| TT | 91 | 50.3 | 83 | 45.9 | 39 | 21.6 |
| TC/CC | 50 | 56.8 | 46 | 59.0 | 22 | 28.2 |
| rs9807014 | ||||||
| CC | 98 | 55.7 | 88 | 50.0 | 43 | 24.4 |
| CT/TT | 43 | 51.8 | 41 | 49.4 | 18 | 21.7 |
1
χ2 P < 0.05 for difference in seropositivity across genotypes.
2
Genus betaHPV species described in Table 2.