. 2003 Mar 1;13(3):347–357. doi: 10.1101/gr.1003303

Table 1.

Summary of Verified Variant Sites of Genomic Rearrangement

Clone ID	Event	Chrom	Fish	STS	Dup. content^a	Gene content^a	Avg. Log₂ ratio
Clone ID	Event	Chrom	Fish	STS	Dup. content^a	Gene content^a	PPA	PTR	GGO	PPY
RP11-88L18	Duplication	5	5p15	AFM105XG1	Intra, ∼50 kb @ 99%	None	−0.25	−0.10	−1.13	0.65
RP11-64I02	Duplication	7	7p14	SHGC-33366	None	RFP-1	0.15	0.15	0.71	−0.18
RP11-218N24	Duplication	8	8p22	SHGC-11994	None	CTSB, FDFT1, GATA4	0.67	0.51	0.08	0.32
RP11-209M09	Duplication	11	11p15	SHGC-14668	Intra, ∼50 kb @ 98%	RRM1	0.81	0.29	−0.09	0.27
RP11-56J22	Duplication	11	11p15.1	AFM210yb8	None	None	−0.09	−0.14	−0.11	0.69
RP11-194H07	Duplication	15	15q14	SHGC-24145	Intra, ∼40 kb @ 99%	SLC12A6, NOLA3, KIAA0855	0.47	0.36	−0.06	1.23
RP11-49M06	Duplication	16	16p13.2	SHGC-11261	None	PIG7, SNN, LOC51061	0.04	0.10	0.13	1.20
RP11-171I08	Deletion	11	11p11.12	WI-636	Intra, ∼30 kb @ 95%	None	−0.01	−0.06	−0.49	−0.96
RP11-75H24	Deletion	11	11q12.3	G29694	Intra, ∼50 kb @ 95%	None	−0.61	−0.64	0.00	−0.46

Defined as within 100 kb proximal or distal of the BAC-linked STS according to the UCSC Genome Browser, August 2001 assembly.

Average Log₂ ratios exceeding the +/−0.5 threshold are indicated in bold type.

Experimentally verified gains and losses among great ape species, with respect to the human genome, were mapped and characterized for local duplication and genic content. The species average Log₂ ratios for each variant site are shown for all species examined. Duplication content is indicated with the type, approximate size, and percent similarity of the duplications involved.