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. 2015 Jan 22;10(1):e0116524. doi: 10.1371/journal.pone.0116524

Table 3. VADAR prediction Model molecular characteristics.

Characteristic G. lucidum P. ostreatus Expected value (EV)
α-helix 31 (6%) 31 (6%) -
β-sheet 242 (48%) 238 (47%) -
Coil 225 (45%) 227 (45%) -
Turn 148 (29%) 136 (27%) -
Hydrogen bond average distance (Å) 2.1 (ds 0.3) 2.1 (ds 0.3) 2.2 (ds 0.4)
Hydrogen bond average energy (kJ mol-1) -2.0 (ds 0.9) -2.0 (ds 0.9) -2.0 (ds 0.8)
Number of residues with hydrogen bonds 328 (65%) 323 (65%) 75%
Helix average (Φ) -65.6° (ds 8.8) -65.6° (ds 8.8) -65.3° (ds 11.9)
Helix average (ψ) -33.3° (ds 13.8) -33.3° (ds 13.8) -39.4° (ds 25.5)
ω average angle (>90°) 179.6° (ds 2.9) 179.6° (ds 2.9) 180° (ds 5.8)
Number of residues with ω angles <90° 5 (1%) 4 (0%) -
Total ASA (Å2) 18450.8 19202.8 17735.3
Molecular weight (kDa) 53.84604 54.18090 -

Additionally, NetNGlyc program predicted six potential N-glycosylation sites: (residues 30, 41, 49, 274, 335, and 418) for LaccGluc and one position (residue 436) for LaccPost.