Table 3. VADAR prediction Model molecular characteristics.
Characteristic | G. lucidum | P. ostreatus | Expected value (EV) |
---|---|---|---|
α-helix | 31 (6%) | 31 (6%) | - |
β-sheet | 242 (48%) | 238 (47%) | - |
Coil | 225 (45%) | 227 (45%) | - |
Turn | 148 (29%) | 136 (27%) | - |
Hydrogen bond average distance (Å) | 2.1 (ds 0.3) | 2.1 (ds 0.3) | 2.2 (ds 0.4) |
Hydrogen bond average energy (kJ mol-1) | -2.0 (ds 0.9) | -2.0 (ds 0.9) | -2.0 (ds 0.8) |
Number of residues with hydrogen bonds | 328 (65%) | 323 (65%) | 75% |
Helix average (Φ) | -65.6° (ds 8.8) | -65.6° (ds 8.8) | -65.3° (ds 11.9) |
Helix average (ψ) | -33.3° (ds 13.8) | -33.3° (ds 13.8) | -39.4° (ds 25.5) |
ω average angle (>90°) | 179.6° (ds 2.9) | 179.6° (ds 2.9) | 180° (ds 5.8) |
Number of residues with ω angles <90° | 5 (1%) | 4 (0%) | - |
Total ASA (Å2) | 18450.8 | 19202.8 | 17735.3 |
Molecular weight (kDa) | 53.84604 | 54.18090 | - |
Additionally, NetNGlyc program predicted six potential N-glycosylation sites: (residues 30, 41, 49, 274, 335, and 418) for LaccGluc and one position (residue 436) for LaccPost.