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. 2015 Jan 23;11(1):e1004620. doi: 10.1371/journal.ppat.1004620

Table 1. Cis-regulatory sequence elements within the promoter of the oncogenes IaaH, IaaM and Ipt encoded on the T-DNA of the Ti plasmid from A. tumefaciens strain C58, pTiC58.

Promoter (sequence) IaaH(−1 to −301) IaaM(−1 to −301) Ipt fwd(−1 to −654) Iptrev (−1 to −654)
Positions of core promoter sequence elements
Inr box (YYANWYY) −2 CCAAACC +5 −2 CTACACA +5 −2 CTAATCC +5
Start coden (ATG) +12 ATG +26 ATG +44 ATG
TATA box(TATAAA) −36 TATATT −31 1 −32 TAAATA −27 2 −29 TATAAC −24 34, 56
CAAT box(GGNCAATCN) −66 CCAAT −62 1 −75 CCATT −71 2 −72 GGTAAAGCC −64 3 −49 AAGGAATCT −41 4 , 5

Positive numbers indicate the positions downstream and negative numbers the positions upstream of the TSSs (+1). Y = C/T, K = G/T, W = A/T, R = A/G, N = A/G/C/T.

1. [23]

2. [24]

3. [22]

4. [72]

5. [73]

6. [74]