Table 1.
Gene annotation of Hope Sr2 region and comparison with the corresponding region in CS
| No. | Name | Annotation | Hope gene start | Hope gene end | CS gene id | CS gene pos |
|---|---|---|---|---|---|---|
| 1 | MSF_1$ | Male sterility factor | 29132 | 35097 | ctg0011b.00010.1 | 8024 |
| 2 | EP_1$ | Hypothetical protein | 39298 | 41832 | ctg0011b.00020.1 | 16001 |
| 3 | RKO_1$ | Receptor kinase | 45570 | 48036 | ctg0011b.00030.1 | 21207 |
| 4 | MSF_2$ | Male sterility factor | 174463 | 180047 | ctg0011b.00040.1 | 130246 |
| 5 | Flowering Locus T-like_1 | Flowering Locus T-like protein | 207129 | 208229 | ctg0011b.00050.1 | 154860* |
| 6 | Flowering Locus T-like_2 | Flowering Locus T-like protein | 274176 | 275721 | ctg0011b.00060.1 | 218850 |
| 7 | Flowering Locus T-like_3 | Flowering Locus T-like protein | 322283 | 323263 | ctg0011b.00070.1 | 281996 |
| 8 | RKO_2 | receptor kinase | 329447 | 331621 | ctg0011b.00080.1 | 293102 |
| 9 | RKO_3 | receptor kinase | 332015 | 335105 | ctg0011b.00090.1 | 295683 |
| 10 | EMB_1 | PPR repeat domain containing protein | 339212 | 341395 | ctg0011b.000100.1 | 307937 |
| 11 | Flowering Locus T-like# | Flowering Locus T-like protein | - | - | ctg0011b.000110.1 | 351119 |
| 12 | EMB_2# | PPR repeat domain containing protein | - | - | ctg0011b.000120.1 | 379263 |
| 13 | WD domain* | similar to WD domain, G-beta repeat | 349395 | 355055 | ctg0011b.000130.1 | 385794 |
| 14 | GLP_1 | Germin-like protein | 398118 | 398929 | - | |
| 15 | GLP_2 | Germin-like protein | 399614 | 400424 | - | |
| 16 | GLP_3 | Germin-like protein | 423764 | 424562 | - | |
| 17 | GLP_4 | Germin-like protein | 425172 | 425984 | - | |
| 18 | GLP_10* | Germin-like protein | 444653 | 445216 | ||
| 19 | GLP_6* | Germin-like protein | 455726 | 456520 | - | |
| 20 | GLP_5* | Germin-like protein | 463024 | 463811 | - | |
| 21 | GLP_8 | Germin-like protein | 474211 | 475020 | - | |
| 22 | GLP_9 | Germin-like protein | 475777 | 476588 | - | |
| 23 | GLP_7 | Germin-like protein | 508822 | 509633 | - | |
| 24 | TPR1 | Tetratricopeptide repeat domain containing protein | 546645 | 549809 | ctg0011b.000140.1 | 435705 |
| 25 | D8LAL2 | Hypothetical protein | 562871 | 565156 | ctg0011b.000160.1 | 447301 |
| 26 | CD882879 | Hypothetical protein | 587682 | 589820 | 464713 | |
| 27 | TPR2* | Tetratricopeptide repeat domain containing protein | 613921 | 615236 | ctg0011b.000170.1 | 498370 |
| 28 | D8LAL1 | Hypothetical protein | 625926 | 626996 | ctg0011b.000150.1 | 443924 |
| 29 | CA696601 | Hypothetical protein | 670987 | 671361 | ||
| 30 | TPR2* | Tetratricopeptide repeat domain containing protein | 692673 | 695113 | ctg0011b.000170.1 | 498370 |
| 31 | CN010964 | Hypothetical protein | 710337 | 711484 | 574223* | |
| 32 | CA694126 | No annotation | 712343 | 712774 | 507295* | |
| 33 | HP626985 | Hypothetical protein | 776063 | 776392 | 507441* | |
| 34 | CN010964 | Hypothetical protein | 809317 | 810476 | 574223* | |
| 35 | FLA30 | fasciclin-like arabinogalactan precursor | 840622 | 841206 | ctg0011b.000180.1 | 510269 |
| 36 | BEX_1 | beta-expansin 1a precursor | 846394 | 847826 | ctg0011b.000190.1 | 561427 |
| 37 | BEX_2 | beta-expansin 1a precursor | 854813 | 856068 | ctg0011b.000200.1 | 570188 |
| 38 | BEX_3 | beta-expansin 1a precursor | 892334 | 893409 | ||
| 39 | BM138011_1 | BTB-domain containing protein | 909112 | 909465 | ||
| 40 | DOX_1$ | disulfide oxidoreductase | 914790 | 916571 | ctg0011b.000210.1 | 590774 |
| 41 | CA681101$ | Hypothetical protein | 923311 | 923709 | 599356 | |
| 42 | BM138011_2$ | BTB-domain containing protein | 926622 | 926983 | 602889 | |
| 43 | BTB-domain containing protein$ | 957404 | 959539 | 109661* | ||
| 44 | RGA_1$* | similar to disease resistance RPM1-like protein | 960894 | 966749 | ctg0011b.000220.1 | 704997 |
$Recombining genes; *partial genes/pseudogenes; Not present in Hope.