Table 6. Identification of band fragments in DGGE gels (Fig. 1A).
| Band no. * | Closest relative and NCBI accession number | Identity ◆ |
|---|---|---|
| 1 | Uncultured bacterium (JQ187036.1) | 99% |
| 2 | Clostridium mayombei DSM 6539T (FR733682.1) | 100% |
| 3 | Eubacterium eligens ATCC 27750 (CP001104.1) | 97% |
| 4 | Uncultured bacterium (NR_025207.1) | 97% |
| 5 | Robinsoniella peoriensis (AF445283.2) | 96% |
| 6 | Uncultured bacterium (HQ716245.1) | 100% |
| 7 | Ruminococcus sp. (FJ611794.2) | 100% |
| 8 | Clostridium irregulare (JX898025.1) | 97% |
| 9 | Uncultured bacterium (JQ820130.1) | 100% |
| 10 | Clostridiaceae bacterium (EU728782.1) | 98% |
| 11 | Eubacterium coprostanoligenes (HM037995.1) | 99% |
| 12 | Uncultured bacterium (GQ137884.1) | 99% |
| 13 | Swine manure bacterium (AY167964.1) | 99% |
| 14 | Uncultured bacterium (FP077070.1) | 100% |
| 15 | Uncultured bacterium (FP078153.1) | 99% |
| 16 | Uncultured Firmicutes bacterium (JN568109.1) | 100% |
| 17 | Lachnospiraceae bacterium (EU728751.1) | 99% |
| 18 | Ruminococcus obeum (AY169411.1) | 100% |
| 19 | Uncultured bacterium (EU472437.1) | 97% |
| 20 | Uncultured Lachnospiraceae bacterium (JX230492.1) | 100% |
| 21 | Faecalibacterium prausnitzii (AY169430.1) | 99% |
| 22 | Uncultured bacterium (HF952852.1) | 99% |
| 23 | Lactobacillus reuteri (CP006603.1) | 99% |
| 24 | Lactobacillus kitasatonis DSM 16761T (FR683090.1) | 98% |
| 25 | Lactobacillus johnsonii NCC 533 (NR_075064.1) | 96% |
* Bands are numbered according to Fig. 1A.
◆Identity represents the sequence identity (%) compared with that in the GenBank database.