Table 3.
The benchmark set of 27 known cooperative TF pairs.
| TF pairs | MIPS complex ID | MIPS complex name |
|---|---|---|
| ARG80-MCM1 | 510.190.120 | ARG complex |
| MET4-MET28 | 510.190.160.10 510.190.160.20 510.190.160.30 |
Cbf1/Met4/Met28 complex Met4/Met28/Met31 complex Met4/Met28/Met32 complex |
| STP4-STP1 | 440.30.30 | tRNA splicing |
| IME1-UME6 | 510.190.200 | Ume6/Ime1 complex |
| HAP5-HAP4 | 510.160 | CCAAT-binding factor complex |
| STP2-STP1 | 440.30.30 | tRNA splicing |
| HAP2-HAP3 | 510.160 | CCAAT-binding factor complex |
| ARG80-ARG81 | 510.190.120 | ARG complex |
| MET4-MET31 | 510.190.160.20 | Met4/Met28/Met31 complex |
| CBF1-MET28 | 510.190.160.10 | Cbf1/Met4/Met28 complex |
| MCM1-ARG81 | 510.190.120 | ARG complex |
| HAP5-HAP2 | 510.160 | CCAAT-binding factor complex |
| HAP4-HAP2 | 510.160 | CCAAT-binding factor complex |
| PIP2-OAF1 | 510.190.100 | OAF complex |
| MET4-CBF1 | 510.190.160.10 | Cbf1/Met4/Met28 complex |
| GCR1-GCR2 | 510.190.90 | GCR complex |
| RTG1-RTG3 | 510.190.130 | RTG complex |
| SWI6-MBP1 | 510.190.70 | MBF complex |
| HAP5-HAP3 | 510.160 | CCAAT-binding factor complex |
| HAP4-HAP3 | 510.160 | CCAAT-binding factor complex |
| GAL3-GAL80 | 510.190.80 | GAL80 complex |
| MET4-MET32 | 510.190.160.30 | Met4/Met28/Met32 complex |
| STP4-STP2 | 440.30.30 | tRNA splicing |
| SWI4-SWI6 | 510.190.60 | SBF complex |
| GAL80-GAL4 | 510.190.80 | GAL80 complex |
| MET32-MET28 | 510.190.160.30 | Met4/Met28/Met32 complex |
| MET28-MET31 | 510.190.160.20 | Met4/Met28/Met31 complex |
The list of 27 known cooperative TF pairs are derived from biochemically well-defined transcriptional complexes within the MIPS complex catalogue.