Table 2.
Number and size of data files on websites
| File count | Median size (Mb) | Average size (Mb) | Largest size (Mb) | Total size (Mb) | Similar directories | iPlant directory name |
|---|---|---|---|---|---|---|
| 68,253 |
0.0 |
0.3 |
481.1 |
23,116.6 |
|
onekp_pilot |
| 48,053 |
0.0 |
0.3 |
481.1 |
14,956.7 |
|
onekp_pilot/orthogroups |
| 19,220 |
0.1 |
0.7 |
243.8 |
13,276.5 |
|
onekp_pilot/orthogroups/alignments |
| 9,610 |
0.1 |
0.3 |
79.8 |
3,289.6 |
|
onekp_pilot/orthogroups/alignments/FAA |
| 9,610 |
0.2 |
1.0 |
243.8 |
9,986.9 |
|
onekp_pilot/orthogroups/alignments/FNA |
| 28,833 |
0.0 |
0.1 |
481.1 |
1,680.2 |
|
onekp_pilot/orthogroups/gene_trees |
| 9,611 |
0.0 |
0.1 |
481.1 |
583.3 |
|
onekp_pilot/orthogroups/gene_trees/FAA |
| 9,610 |
0.0 |
0.0 |
0.5 |
102.2 |
|
onekp_pilot/orthogroups/gene_trees/FAA/trees |
| 19,222 |
0.0 |
0.1 |
458.0 |
1,096.8 |
|
onekp_pilot/orthogroups/gene_trees/FNA |
| 9,611 |
0.0 |
0.1 |
458.0 |
556.6 |
|
onekp_pilot/orthogroups/gene_trees/FNA/12_codon |
| 9,610 |
0.0 |
0.0 |
0.5 |
98.5 |
|
onekp_pilot/orthogroups/gene_trees/FNA/12_codon/trees |
| 9,611 |
0.0 |
0.1 |
439.1 |
540.3 |
|
onekp_pilot/orthogroups/gene_trees/FNA/all_codon |
| 9,610 |
0.0 |
0.0 |
0.5 |
101.2 |
|
onekp_pilot/orthogroups/gene_trees/FNA/all_codon/dna_tree |
| 19,919 |
0.0 |
0.2 |
175.2 |
3,468.8 |
|
onekp_pilot/phylogenetic_analysis |
| 2,556 |
0.1 |
0.1 |
1.0 |
292.7 |
|
onekp_pilot/phylogenetic_analysis/alignments |
| 852 |
0.0 |
0.0 |
0.3 |
41.8 |
|
onekp_pilot/phylogenetic_analysis/alignments/FAA |
| 852 |
0.1 |
0.1 |
1.0 |
125.5 |
|
onekp_pilot/phylogenetic_analysis/alignments/FNA |
| 852 |
0.1 |
0.1 |
0.9 |
125.4 |
|
onekp_pilot/phylogenetic_analysis/alignments/FNA2AA |
| 17,197 |
0.0 |
0.1 |
0.4 |
1,827.3 |
|
onekp_pilot/phylogenetic_analysis/gene_trees |
| 1,704 |
0.0 |
0.1 |
0.4 |
238.3 |
|
onekp_pilot/phylogenetic_analysis/gene_trees/FAA |
| 2 |
0.3 |
0.1 |
0.4 |
0.3 |
852 |
onekp_pilot/phylogenetic_analysis/gene_trees/FAA/raxmlboot.#### |
| 1,704 |
0.0 |
0.1 |
0.4 |
238.3 |
|
onekp_pilot/phylogenetic_analysis/gene_trees/FNA |
| 2 |
0.3 |
0.1 |
0.4 |
0.3 |
852 |
onekp_pilot/phylogenetic_analysis/gene_trees/FNA/raxmlboot.#### |
| 3,408 |
0.0 |
0.1 |
0.4 |
476.7 |
|
onekp_pilot/phylogenetic_analysis/gene_trees/FNA2AA |
| 2 |
0.3 |
0.1 |
0.4 |
0.3 |
852 |
onekp_pilot/phylogenetic_analysis/gene_trees/FNA2AA/raxmlboot.#### |
| 2 |
0.3 |
0.1 |
0.4 |
0.3 |
852 |
onekp_pilot/phylogenetic_analysis/gene_trees/FNA2AA/raxmlboot.####.c1c2 |
| 10,381 |
0.0 |
0.1 |
0.4 |
874.0 |
|
onekp_pilot/phylogenetic_analysis/gene_trees/filtered |
| 2,548 |
0.0 |
0.1 |
0.4 |
169.3 |
|
onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FAA |
| 1 |
0.0 |
0.0 |
0.0 |
0.0 |
852 |
onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FAA/raxmlboot.####.f25 |
| 1 |
0.2 |
0.1 |
0.4 |
0.2 |
852 |
onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FAA/raxmlboot.####.filterlen33 |
| 852 |
0.0 |
0.0 |
0.0 |
3.8 |
|
onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA |
| 1 |
0.0 |
0.0 |
0.0 |
0.0 |
852 |
onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA/raxmlboot.####.f25 |
| 6,980 |
0.0 |
0.1 |
0.4 |
700.9 |
|
onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA |
| 2 |
0.3 |
0.1 |
0.4 |
0.3 |
852 |
onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA/raxmlboot.####.GAMMA.2 |
| 2 |
0.3 |
0.1 |
0.4 |
0.3 |
852 |
onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA/raxmlboot.####.c1c2.GAMMA.2 |
| 1 |
0.0 |
0.0 |
0.0 |
0.0 |
852 |
onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA/raxmlboot.####.c1c2.f25 |
| 1 |
0.0 |
0.0 |
0.0 |
0.0 |
852 |
onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA/raxmlboot.####.f25 |
| 2 |
0.2 |
0.1 |
0.4 |
0.2 |
844 |
onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA/raxmlboot.####.filterlen33 |
| 1 |
0.3 |
0.3 |
0.4 |
0.3 |
180 |
onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA/raxmlboot.####.filtered25.GAMMA.2 |
| 166 |
0.0 |
8.1 |
175.2 |
1,348.8 |
|
onekp_pilot/phylogenetic_analysis/species_level |
| 50 |
15.0 |
27.0 |
175.2 |
1,348.1 |
|
onekp_pilot/phylogenetic_analysis/species_level/alignments |
| 15 |
14.7 |
14.3 |
58.3 |
214.2 |
|
onekp_pilot/phylogenetic_analysis/species_level/alignments/FAA |
| 35 |
29.4 |
32.4 |
175.2 |
1,133.9 |
|
onekp_pilot/phylogenetic_analysis/species_level/alignments/FNA |
| 116 |
0.0 |
0.0 |
0.0 |
0.6 |
|
onekp_pilot/phylogenetic_analysis/species_level/trees |
| 276 |
10.0 |
17.0 |
157.4 |
4,691.1 |
|
onekp_pilot/taxa |
| 3 |
9.7 |
17.0 |
157.4 |
51.0 |
92 |
onekp_pilot/taxa/####-############ |
| 1 |
30.8 |
17.0 |
157.4 |
36.0 |
92 |
onekp_pilot/taxa/####-############/assemblies |
| 2 |
9.7 |
7.5 |
45.2 |
15.0 |
92 |
onekp_pilot/taxa/####-############/translations |
| 5 |
0.0 |
0.0 |
0.0 |
0.1 |
|
onekp_pilot/tools |
|
File count |
Median size (Mb) |
Average size (Mb) |
Largest size (Mb) |
Total size (Mb) |
Similar directories |
Contents at SRA (PRJEB4921) |
| 178 |
1,915.0 |
2,045.5 |
3,371.0 |
364,100.0 |
|
total of all short reads -- uncompressed, but downloads are compressed to a quarter of these sizes |
| 2 | 1,915.0 | 2,045.5 | 3,371.0 | 4,091.0 | 89 | expecting per sample -- uncompressed, but downloads are compressed to a quarter of these sizes |
In some instances, users will find many directories with similar names, as indicated in this table by hash (#) marks. The total number of directories is given in the preceding column.