Table 2.
Source | Number of types | Percent of human genome | Estimated average size (kb) | Reference |
---|---|---|---|---|
Mammalian lincRNome | 53647 | 2.3 | 1.4 | Managadze et al. (2013) |
LNCipedia (as of March 2014)* | 21487 | 0.67 | 1 | Volders et al. (2013) |
FPKM > 1 lincRNAs | 35585 | 1.1** | NA | Hangauer et al. (2013) |
Gencode v7 catalog of human ncRNAs | 9277 | 0.29** | Median of 0.6*** | Derrien et al. (2012) |
LncRNAs – Gencode v21 (as of 2014 November) | 15877 | 0.50** | NA | http://www.gencodegenes.org/stats.html |
Jia et al. (2010) | 5446 | 0.17** | NA | Jia et al. (2010) |
Cabili – low confidence | 8195 | 0.26 | 1 | Cabili et al. (2011) |
Cabili – high confidence | 4273 | 0.26 | 1 | Cabili et al. (2011) |
Small ncRNAs – Gencode v21 (as of 2014 November)**** | 9534 | 0.045 | 0.15 | http://www.gencodegenes.org/stats.html |
eRNAs | 43011 | 0.34 | 0.25 | Andersson et al. (2014) |
*Splice variants were excluded.
**Assumes an average length of 1 kb.
***Median size of 592 nucleotides but with a significant fraction at higher sizes.
****Contains snRNAs, snoRNAs, rRNAs, mitochondrial tRNAs and rRNAs, miRNAs, and “miscellaneous RNAs.”