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. Author manuscript; available in PMC: 2016 Jan 31.
Published in final edited form as: Mamm Genome. 2015 Jan 6;26(0):43–56. doi: 10.1007/s00335-014-9553-8

Table 3.

Candidate Genes Predisposing Variation in DID Alcohol Consumption.

Transcript Information Male DID Phenotype
Correlation
eQTL information Gene Product Function
Gene Symbol Gene Name Physical Location:
Chr (Mb)
Coefficient Nominal p-value
(FDR)
eQTL Location
Chr (Mb)
LOD Score
(p-value)
Trim62 tripartite motif-containing 62 4 (128.9) −0.62 0.0001
(0.037)
4 (128.6) 7.5 (<0.0001) RING finger E3 ubiquitin ligase (Huang et al. 2013)
Wrn Werner syndrome homolog
(human)
8 (33.3) −0.59 0.0002
(0.037)
4 (124.9) 8.8 (<0.0001) RecQ-type DNA helicase involved in DNA
repair, replication, transcription; deficiency
leads to premature age-associated
pathologies (Werner Syndrome) (Turaga et al. 2009).
Gtf3c1
(TFIIIC)
general transcription factor
III C 1
7 (125.6) 0.58 0.0003
(0.037)
7 (125.2) 7.1 (<0.0001) Transcription factor that interacts with
tDNAs (tRNA genes) that act as chromatin
insulators. Plays a key role in genome
organization allowing for changes in gene
transcription (Van Bortle and Corces 2012).
Pld5 phospholipase D family,
member 5
1 (176.0) 0.58 0.0004
(0.037)
1 (175.6) 20.7 (<0.0001) Converts phosphatidylinositol 3, 4, 5-
trisphosphate to inositol 3, 4, 5 trisphosphate
and phosphatidic acid (Ching et al. 1999).
Arntl
(Bmal1)
aryl hydrocarbon receptor
nuclear translocator-like
7 (113.2) −0.55 0.0007
(0.060)
7 (124.6) 3.8
(0.0260)
Transcription factor, core component of
mammalian circadian rhythm system;
regulates behavioral, physiological and
chromatin modification rhythms (Hatanaka et al. 2010; Menet et al. 2014; Mieda and Sakurai 2011).

Candidate genes were identified based on significant correlation of transcript clusters with the male DID phenotype and eQTL overlap with DID phenotype QTL.