Table 3.
Candidate Genes Predisposing Variation in DID Alcohol Consumption.
Transcript Information |
Male DID Phenotype Correlation |
eQTL information | Gene Product Function | ||||
---|---|---|---|---|---|---|---|
Gene Symbol | Gene Name |
Physical Location: Chr (Mb) |
Coefficient |
Nominal p-value (FDR) |
eQTL Location Chr (Mb) |
LOD Score (p-value) |
|
Trim62 | tripartite motif-containing 62 | 4 (128.9) | −0.62 | 0.0001 (0.037) |
4 (128.6) | 7.5 (<0.0001) | RING finger E3 ubiquitin ligase (Huang et al. 2013) |
Wrn | Werner syndrome homolog (human) |
8 (33.3) | −0.59 | 0.0002 (0.037) |
4 (124.9) | 8.8 (<0.0001) | RecQ-type DNA helicase involved in DNA repair, replication, transcription; deficiency leads to premature age-associated pathologies (Werner Syndrome) (Turaga et al. 2009). |
Gtf3c1 (TFIIIC) |
general transcription factor III C 1 |
7 (125.6) | 0.58 | 0.0003 (0.037) |
7 (125.2) | 7.1 (<0.0001) | Transcription factor that interacts with tDNAs (tRNA genes) that act as chromatin insulators. Plays a key role in genome organization allowing for changes in gene transcription (Van Bortle and Corces 2012). |
Pld5 | phospholipase D family, member 5 |
1 (176.0) | 0.58 | 0.0004 (0.037) |
1 (175.6) | 20.7 (<0.0001) | Converts phosphatidylinositol 3, 4, 5- trisphosphate to inositol 3, 4, 5 trisphosphate and phosphatidic acid (Ching et al. 1999). |
Arntl (Bmal1) |
aryl hydrocarbon receptor nuclear translocator-like |
7 (113.2) | −0.55 | 0.0007 (0.060) |
7 (124.6) | 3.8 (0.0260) |
Transcription factor, core component of mammalian circadian rhythm system; regulates behavioral, physiological and chromatin modification rhythms (Hatanaka et al. 2010; Menet et al. 2014; Mieda and Sakurai 2011). |
Candidate genes were identified based on significant correlation of transcript clusters with the male DID phenotype and eQTL overlap with DID phenotype QTL.