Table 2.

Transcription factor binding sites, identified in the ENCODE project [23], and transcribed enhancer regions identified by the FANTOM project that overlap with eRNA gene bodies. Overlap with eRNA promoters (from +500 bp to −2 kb relative to the transcription start site) is indicated in brackets.

Gene	p65	JUN	FOS	JUND	FANTOM enhancer
ACSL1 eRNA	5 (0)	2 (0)	7 (0)	4 (1)	3 (0)
MARCKS eRNA	5 (0)	1 (0)	4 (0)	4 (0)	7 (0)
AZIN1 eRNA	1 (0)	0 (0)	1 (0)	0 (0)	2 (0)
TNFSF8 eRNA	3 (1)	2 (0)	3 (1)	3 (0)	4 (1)
SLC30A4 eRNA	1 (0)	1 (0)	4 (1)	3 (0)	4 (0)
SOCS3 eRNA	3 (1)	0 (1)	1 (1)	1 (2)	1 (1)
IL6	0 (1)	2 (3)	1 (1)	2 (0)	0 (0)
SOD2	2 (1)	0 (1)	1 (2)	2 (3)	0 (0)