Table 2. Mascot score of total protein match using peak lists from MWD and Distiller for all MS/MS spectra.

Experiment	Mascot search score
	MWD list	Distiller list
BSA1	955	689
BSA2	890	473
BSA3	746	338
BSA4	440	234
BSA5	650	378
BSA6	823	438
BSA7	362	82
BSA8	165	N/A*)
BSA9	325	175
ADH1	330	209
ADH2	157	160
LZM1	113	82
LZM2	118	83
LZM3	141	122
LZM4	175	143

*⁾ N/A indicates no hit found for the correct protein.