Table 3. The details of ion score obtained by Mascot search using peak lists from two different peak detection tools.

Spectral information			Mascot search score
Well #	Precursor ion (Da)	Peptide	MWD list	Distiller list
17	1072.648	SHCIAEVEK	24	Xb)
23	1443.798	YICDNQDTISSK	68	X
30	1674.062	QEPERNECFLSHK	19	X
35	1927.895	CCAADDKEACFAVEGPK	36	X
40	1554.788	DDPHACYSTVFDK	23	16
43	1305.760	HLVDEPQNLIK	31	X
43	1576.932	LKPDPNTLCDEFK	18	X
44	927.463	YLYEIAR	50	48
45	1640.114	KVPQVSTPTLVEVSR	69	69
46	1512.013	VPQVSTPTLVEVSR	54	X
49	1881.019	RPCFSALTPDETYVPK	41	19
50	927.436	YLYEIAR	[32]a)	[31]
51	1163.495	LVNELTEFAK	59	46
53	1439.835	RHPEYAVSVLLR	57	30
56	1283.899	HPEYAVSVLLR	47	23
56	1419.878	SLHTLFGDELCK	66	71
59	927.557	YLYEIAR	[23]	X
59	1479.976	LGEYGFQNALIVR	31	X
63	927.698	YLYEIAR	[27]	[20]
63	1419.950	SLHTLFGDELCK	[44]	[12]
70	2045.571	RHPYFYAPELLYYANK	11	X
70	1480.156	LGEYGFQNALIVR	X	17
72	1567.923	DAFLGSFLYEYSR	42	X
		Total score (Coverage)	746 (33%)	338 (16%)

^a) The score in bracket represents duplicate peptide from the search results. ^b) Symbol (X) indicates that the match of peptide was not found from the peak list.