. 2014 Dec 29;16(1):521–534. doi: 10.3390/ijms16010521

Table 3.

Gene expression and amino acid variation of SAMe genes in subgroups.

Subgroups *	Orthologs Pfam	Gene	RPKM			Amino Acid Variation
Subgroups *	Orthologs Pfam	Gene	FLJ Bud	FLJ Flower1	rFLJ Bud	Amino Acid Variation
II-2	PF03141	FLJSAMT59	120.99	106.17		365A/E
II-2	PF03141	rFLJSAM40			248.90	365A/E
II-8	PF03141	FLJSAMT53	495.65	860.77		275H/R, 289N/D, 441D/E, 623A/E
II-8	PF03141	rFLJSAMT30			0	275H/R, 289N/D, 441D/E, 623A/E
II-11	PF03141	FLJSAMT51	68.79	82.94		none
	PF03141	rFLJSAMT28			0	none
	PF03141	FLJSAMT73	151.06	153.34		none
	PF03141	rFLJSAMT87			0	none
	PF03141	FLJSAMT77	118.24	153.34		none
	PF03141	rFLJSAMT97			0	none
I-1	PF01135	FLJSAMT12	141.97	121.13		197V/I
	PF01135	rFLJSAMT2			0	197V/I
	PF02005	FLJSAMT36	77.75	54.43		49E/Q, 299L/S, 599V/A
	PF02005	rFLJSAMT45			0	49E/Q, 299L/S, 599V/A
	PF02353	FLJSAMT37	52.42	60.38		none
	PF02353	rFLJSAMT24			5.90	none

Abbreviations: FLJ, Lonicera japonica; rFLJ, Lonicera japonica. var. chinensis (Watts.); FLJ bud, had white petals and had not yet bloomed into a full-size flower; FLJ flower1, had white petals and had bloomed into a full-size flower; rFLJ bud, had red petals and had not yet bloomed into a full-size flower; * Subgroups were showed in Figure S1; II-2, subgroups 2 in the second cluster; II-8, subgroups 8 in the second cluster; II-11, subgroups 11 in the second cluster; I-1, subgroups 1 in the fiest cluster.