Table 3.

Comparison of the ‘brute force’ Lapack diagonalization and the coarse grained method for different atomic models.

Molecule	Atoms	Lapack Time [s]	Lapack RAM [Gb]	CNMA Time [s]	CNMA RAM [Gb]
WW	551	14.4	0.04	0.37	0.01
BPTI	882	59.9	0.11	0.89	0.03
CaM	2262	980.6	0.74	3.89	0.12
Tyr Kinase	7214	31450.0	7.49	31.90	0.69
F1-ATPase	51181	11.2E6	377.0	1827.0	2.04