Table 1.
Annotation of Known Genes
| Gene symbol | Gene name | GenBank accession number | Annotations at the most specific level of GO | Annotations to the 23 broad cellular processes used for learning |
| SEPP1 | Selenoprotein P, plasma, 1 | AA045003 | Oxidative stress response (GO: 0006979), metal ion transport (GO:0006823) | Stress response (GO:0006950), transport (GO:0006810) |
| EPB41L2 | Erythrocyte membrane protein band 4.1-like 2 | W88572 | Positive control of cell proliferation (GO:0008284) | Cell proliferation (GO:0008283) |
| OA48-18 | Acid-inducible phosphoprotein | AA029909 | Cell proliferation (GO:0008283) | Cell proliferation (GO:0008283) |
| CTSK | Cathepsin K (pycnodysostosis) | AA044619 | Proteolysis and peptidolysis (GO: 0006508) | Protein metabolism and modification (GO:0006411) |
| CPT1B | Carnitine palmitoyltransferase I, muscle | W89012 | Fatty acid β-oxidation (GO: 0006635) | Lipid metabolism (GO:0006629) |
| CLDN11 | Claudin 11 (oligodendrocyte transmembrane protein) | N22392 | Cell adhesion (GO:0007155), substrate-bound cell migration (GO:0006929), cell proliferation (GO:0008283), developmental processes (GO:0007275) | Cell adhesion (GO:0007155), cell motility (GO:0006928), cell proliferation (GO:0008283), developmental processes (GO: 0007275) |
| RPL5 | Ribosomal protein L5 | AA027277 | Protein biosynthesis (GO: 0006412), ribosomal large subunit assembly and maintenance (GO:0000027) | Protein metabolism and modification (GO:0006411), cell organization and biogenesis (GO:0006996) |
| Homo sapiens clone 23785 mRNA sequence | N32247 | Calcium-independent cell–cell matrix adhesion (GO:0007161) | Cell adhesion (GO:0007155) | |
| ESTs, weakly similar to A45082 neurotrophic receptor ror1 precursor (H. sapiens) | T62968 | Transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169) | Cell surface receptor-linked signal transduction (GO:0007166) | |
| CCNG1 | Cyclin G1 | R45687 | Cell cycle control (GO:0000074), mitotic G2 phase (GO: 0000085), apoptosis (GO: 0006915), mitosis (GO: 0007067) | Cell cycle (GO:0007049), cell death (GO:0008219) |
| CDKN1C | Cyclin-dependent kinase inhibitor 1C (p57, Kip2) | R81336 | Cell cycle arrest (GO:0007050), cell cycle arrest (GO:0007050), negative control of cell proliferation (GO:0008285) | Cell cycle (GO:0007049), cell proliferation (GO:0008283) |
| GRA1 | Glutamate receptor, ionotropic, AMPA 1 | N47974 | Induction of apoptosis (GO: 0006917), cell surface receptor linked signal transduction (GO: 0007166) | Cell death (GO:0008219), cell surface receptor-linked signal transduction (GO:0007166) |
| Homo sapiens mRNA for KIAA1888 protein, partial cds | H26264 | Transport (GO:0006810) | Transport (GO:0006810) | |
| FMOD | Fibromodulin | AA029408 | Cell–cell matrix adhesion (GO: 0007160) | Cell adhesion (GO:0007155) |
| CDK5R1 | Cyclin-dependent kinase 5, regulatory subunit 1 (p35) | R49183 | Cell proliferation (GO:0008283), cell cycle control (GO:0000074) | Cell proliferation (GO:0008283), cell cycle (GO:0007049) |
| CAT | Catalase | W89002 | Oxidative stress response (GO: 0006979), peroxidase reaction (GO:0006804) | Stress response (GO:0006950) |
| Homo sapiens, clone MGC: 16131 IMAGE: 3628944, mRNA, complete cds | R71462 | Transport (GO:0006810), intracellular signaling cascade (GO:0007242) | Transport (GO:0006810), intracellular signaling cascade (GO:0007242) | |
| ESTs, moderately similar to JX0336 succinate dehydrogenase (H. sapiens) | R60996 | Tricarboxylic acid cycle (GO: 0006099), fatty acid metabolism (GO:0006631) | Energy pathways (GO:0006091), lipid metabolism (GO:0006629) |
Annotations for some of the genes in the data set are shown. A full record of annotations for all known genes is provided in Supplemental Material (available online at http://www.genome.org).