Skip to main content
. 2015 Jan 21;15:11. doi: 10.1186/s12870-014-0400-6

Table 3.

Differentially expressed miRNAs in the two small RNA libraries constructed using fruits collected at 15 and 20 weeks after flowering (WAF), based on transcripts per million (TPM) and fold change (FC) at P -value < 0.05

Names Sequences TPM P -value FC
15 WAF 20 WAF
dka-miR156a CGACAGAAGAGAGTGAGCAC 0.010 1.075 0.008 6.748
dka-miR156d TGACAGAAGAGAGTGAGCACA 34.475 322.359 0.000 3.225
dka-miR156j GTTGACAGAAGAGAGTGAGCAC 0.657 11.556 0.008 4.137
dka-miR156j-5p TGACAGAAGAGAGTGAGCAC 65.011 1384.572 0.000 4.413
dka-miR156s TGACAGAAGAGAGTGAGCACT 0.657 9.137 0.006 3.799
dka-miR160a TGCCTGGCTCCCTGAATGCCA 0.010 1.344 0.000 7.070
dka-miR167c TGAAGCTGCCAGCATGATCTGG 0.657 1.612 0.000 1.296
dka-miR167g TGAAGCTGCCAGCATGATCTGA 0.010 1.344 0.000 7.070
dka-miR171n-3p TGATTGAGCCGCGCCAATATC 0.010 1.344 0.001 7.070
dka-miR2275c AGAATTGGAGGAAAACAAACTGA 0.010 1.344 0.001 7.070
dka-miR2911a GGCCGGGGGACGGACTGGGA 158.587 890.888 0.001 2.490
dka-miR398a TGTGTTCTCAGGTCACCCCTT 10.507 1868.581 0.000 7.474
dka-miR398b TGTGTTCTCAGGTCACCCCT 0.010 1.209 0.000 6.918
dka-miR398c TGTGTTCTCAGGTCACCCCTG 0.010 1.478 0.000 7.208
dka-miR398d TGTGTTCTCAGGTCACCCCTC 0.010 1.209 0.000 6.918
dka-miR535c TGACAAGGAGAGAGAGCACGC 0.010 3.494 0.000 8.449
dka-miR827-3p TTAGATGACCATCAGCAAACA 0.010 3.225 0.000 8.333
dka-miR159a-5p GAGCTCCTTGAAGTCCAATTG 6.238 2.150 0.000 −1.537
dka-miR159e-5p GAGCTCCTTGAAGTCCAATT 5.418 1.612 0.000 −1.748
dka-miR164d TGGAGAAGCAGGGCACGTGC 9.358 4.031 0.003 −1.215
dka-miR164e TGGAGAAGCAGGGCACGTGCG 51.056 21.231 0.001 −1.266
dka-miR164f-5p TGGAGAAGCAGGGCACGTGCT 46.624 18.543 0.000 −1.330
dka-miR164h-3p CATGTGCCCTTCTTCTCCATC 3.940 1.344 0.000 −1.552
dka-miR167a TGAAGCTGCCAGCATGATCTC 1.642 0.010 0.008 −7.359
dka-miR171i CGAGCCGAATCAATATCACTC 49.250 18.946 0.000 −1.378
dka-miR172g-5p GGAGCATCATCAAGATTCACA 3.283 0.537 0.004 −2.611
dka-miR2111a TAATCTGCATCCTGAGGTTTA 30.207 7.525 0.004 −2.005
dka-miR2111d GTCCTTAGGATGCAGATTACC 185.346 32.921 0.000 −2.493
dka-miR2916 TGGGGACTCGAAGACGATCATAT 7.880 2.553 0.000 −1.626
dka-miR319i TTGGACTGAAGGGTGCTCCCT 11.820 4.837 0.000 −1.289
dka-miR390b-3p CGCTATCTATCCTGAGCTCCA 1.313 0.537 0.001 −1.289
dka-miR395f ATGAAGTGTTTGGGGGAACTC 16.745 6.853 0.001 −1.289
dka-miR395p-3p GTGAAGTGTTTGGGGGAACTC 37.266 16.125 0.000 −1.209
dka-miR396a-3p GTTCAAGAAAGCTGTGGGAAA 168.601 49.852 0.003 −1.758
dka-miR396a CACAGCTTTCTTGAACTTTCT 7.223 1.747 0.000 −2.048
dka-miR396b TTCCACAGCTTTCTTGAACT 43.012 17.334 0.000 −1.311
dka-miR396d CTCCACAGGCTTTCTTGAACTG 43.012 18.140 0.002 −1.246
dka-miR156l-5p TGACAGAAGAGAGAGAGCACA 1.480 0.010 0.000 −7.210
dka-miR396f TTCCACGGCTTTCTTGAACTG 5.418 0.010 0.000 −9.081
dka-miR396f-3p GGTCAAGAAAGCTGTGGGAAG 365.767 125.772 0.000 −1.540
dka-miR396f-5p TCTCCACAGGCTTTCTTGAACT 6.567 2.553 0.000 −1.363
dka-miR396g TTCCACAGCTTTCTTGAACTT 62326.659 26262.521 0.000 −1.247
dka-miR396i-3p GTTCAATAAAGCTGTGGGAAG 507.937 213.383 0.000 −1.251
dka-miR396k TTCCACGGCTTTCTTGAACC 7.388 2.956 0.002 −1.321
dka-miR396m TTCCACAGCTTTCTTGAACTA 217.851 87.879 0.000 −1.310
dka-miR396r TTCCACGGCTTTCTTGAACTT 16.253 5.509 0.000 −1.561
dka-miR396s TCCCACAGCTTTATTGAACTG 5.910 1.747 0.000 −1.758
dka-miR399a TGCCAAAGGAGAATTGCCC 2.627 0.010 0.000 −8.037
dka-miR399b TGCCAAAGGAGAATTGCCCGG 2.627 0.010 0.002 −8.037
dka-miR399c TGCCAAAGGAGAGTTGCCCTA 6.238 2.419 0.008 −1.367
dka-miR399f TGCCAAAGGAGAATTGCAC 2.463 0.010 0.000 −7.944
dka-miR399h TGCCAAAGGAGATTTGCCCCG 4.925 1.075 0.000 −2.196
dka-miR399h-3p TGCCAAAGGAGAATTGCCCTG 135.275 35.474 0.000 −1.931
dka-miR479 CGTGATATTGGTTCGGCTCATC 31.192 10.481 0.000 −1.573
dka-miR530a TGCATTTGCACCTGCACCTC 1.149 0.010 0.000 −6.844
dka-miR530b TGCATTTGCACCTGCACCTT 7.059 0.010 0.000 −9.463
dka-miR530c TGCATTTGCACCTGCACCTTG 1.313 0.010 0.000 −7.037
dka-miR530d TGCATTTGCACCTGCACTTTC 1.970 0.010 0.000 −7.622
dka-miR530e TGCATTTGCACCTGCACTTTA 1.313 0.010 0.002 −7.037
dka-miR530f TGCATTTGCACCTGCATCTC 1.970 0.010 0.002 −7.622
dka-miR858b TTCGTTGTCTGTTCGACCTTG 36.938 11.690 0.004 −1.660