Table 3.
Differentially expressed miRNAs in the two small RNA libraries constructed using fruits collected at 15 and 20 weeks after flowering (WAF), based on transcripts per million (TPM) and fold change (FC) at P -value < 0.05
| Names | Sequences | TPM | P -value | FC | |
|---|---|---|---|---|---|
| 15 WAF | 20 WAF | ||||
| dka-miR156a | CGACAGAAGAGAGTGAGCAC | 0.010 | 1.075 | 0.008 | 6.748 |
| dka-miR156d | TGACAGAAGAGAGTGAGCACA | 34.475 | 322.359 | 0.000 | 3.225 |
| dka-miR156j | GTTGACAGAAGAGAGTGAGCAC | 0.657 | 11.556 | 0.008 | 4.137 |
| dka-miR156j-5p | TGACAGAAGAGAGTGAGCAC | 65.011 | 1384.572 | 0.000 | 4.413 |
| dka-miR156s | TGACAGAAGAGAGTGAGCACT | 0.657 | 9.137 | 0.006 | 3.799 |
| dka-miR160a | TGCCTGGCTCCCTGAATGCCA | 0.010 | 1.344 | 0.000 | 7.070 |
| dka-miR167c | TGAAGCTGCCAGCATGATCTGG | 0.657 | 1.612 | 0.000 | 1.296 |
| dka-miR167g | TGAAGCTGCCAGCATGATCTGA | 0.010 | 1.344 | 0.000 | 7.070 |
| dka-miR171n-3p | TGATTGAGCCGCGCCAATATC | 0.010 | 1.344 | 0.001 | 7.070 |
| dka-miR2275c | AGAATTGGAGGAAAACAAACTGA | 0.010 | 1.344 | 0.001 | 7.070 |
| dka-miR2911a | GGCCGGGGGACGGACTGGGA | 158.587 | 890.888 | 0.001 | 2.490 |
| dka-miR398a | TGTGTTCTCAGGTCACCCCTT | 10.507 | 1868.581 | 0.000 | 7.474 |
| dka-miR398b | TGTGTTCTCAGGTCACCCCT | 0.010 | 1.209 | 0.000 | 6.918 |
| dka-miR398c | TGTGTTCTCAGGTCACCCCTG | 0.010 | 1.478 | 0.000 | 7.208 |
| dka-miR398d | TGTGTTCTCAGGTCACCCCTC | 0.010 | 1.209 | 0.000 | 6.918 |
| dka-miR535c | TGACAAGGAGAGAGAGCACGC | 0.010 | 3.494 | 0.000 | 8.449 |
| dka-miR827-3p | TTAGATGACCATCAGCAAACA | 0.010 | 3.225 | 0.000 | 8.333 |
| dka-miR159a-5p | GAGCTCCTTGAAGTCCAATTG | 6.238 | 2.150 | 0.000 | −1.537 |
| dka-miR159e-5p | GAGCTCCTTGAAGTCCAATT | 5.418 | 1.612 | 0.000 | −1.748 |
| dka-miR164d | TGGAGAAGCAGGGCACGTGC | 9.358 | 4.031 | 0.003 | −1.215 |
| dka-miR164e | TGGAGAAGCAGGGCACGTGCG | 51.056 | 21.231 | 0.001 | −1.266 |
| dka-miR164f-5p | TGGAGAAGCAGGGCACGTGCT | 46.624 | 18.543 | 0.000 | −1.330 |
| dka-miR164h-3p | CATGTGCCCTTCTTCTCCATC | 3.940 | 1.344 | 0.000 | −1.552 |
| dka-miR167a | TGAAGCTGCCAGCATGATCTC | 1.642 | 0.010 | 0.008 | −7.359 |
| dka-miR171i | CGAGCCGAATCAATATCACTC | 49.250 | 18.946 | 0.000 | −1.378 |
| dka-miR172g-5p | GGAGCATCATCAAGATTCACA | 3.283 | 0.537 | 0.004 | −2.611 |
| dka-miR2111a | TAATCTGCATCCTGAGGTTTA | 30.207 | 7.525 | 0.004 | −2.005 |
| dka-miR2111d | GTCCTTAGGATGCAGATTACC | 185.346 | 32.921 | 0.000 | −2.493 |
| dka-miR2916 | TGGGGACTCGAAGACGATCATAT | 7.880 | 2.553 | 0.000 | −1.626 |
| dka-miR319i | TTGGACTGAAGGGTGCTCCCT | 11.820 | 4.837 | 0.000 | −1.289 |
| dka-miR390b-3p | CGCTATCTATCCTGAGCTCCA | 1.313 | 0.537 | 0.001 | −1.289 |
| dka-miR395f | ATGAAGTGTTTGGGGGAACTC | 16.745 | 6.853 | 0.001 | −1.289 |
| dka-miR395p-3p | GTGAAGTGTTTGGGGGAACTC | 37.266 | 16.125 | 0.000 | −1.209 |
| dka-miR396a-3p | GTTCAAGAAAGCTGTGGGAAA | 168.601 | 49.852 | 0.003 | −1.758 |
| dka-miR396a | CACAGCTTTCTTGAACTTTCT | 7.223 | 1.747 | 0.000 | −2.048 |
| dka-miR396b | TTCCACAGCTTTCTTGAACT | 43.012 | 17.334 | 0.000 | −1.311 |
| dka-miR396d | CTCCACAGGCTTTCTTGAACTG | 43.012 | 18.140 | 0.002 | −1.246 |
| dka-miR156l-5p | TGACAGAAGAGAGAGAGCACA | 1.480 | 0.010 | 0.000 | −7.210 |
| dka-miR396f | TTCCACGGCTTTCTTGAACTG | 5.418 | 0.010 | 0.000 | −9.081 |
| dka-miR396f-3p | GGTCAAGAAAGCTGTGGGAAG | 365.767 | 125.772 | 0.000 | −1.540 |
| dka-miR396f-5p | TCTCCACAGGCTTTCTTGAACT | 6.567 | 2.553 | 0.000 | −1.363 |
| dka-miR396g | TTCCACAGCTTTCTTGAACTT | 62326.659 | 26262.521 | 0.000 | −1.247 |
| dka-miR396i-3p | GTTCAATAAAGCTGTGGGAAG | 507.937 | 213.383 | 0.000 | −1.251 |
| dka-miR396k | TTCCACGGCTTTCTTGAACC | 7.388 | 2.956 | 0.002 | −1.321 |
| dka-miR396m | TTCCACAGCTTTCTTGAACTA | 217.851 | 87.879 | 0.000 | −1.310 |
| dka-miR396r | TTCCACGGCTTTCTTGAACTT | 16.253 | 5.509 | 0.000 | −1.561 |
| dka-miR396s | TCCCACAGCTTTATTGAACTG | 5.910 | 1.747 | 0.000 | −1.758 |
| dka-miR399a | TGCCAAAGGAGAATTGCCC | 2.627 | 0.010 | 0.000 | −8.037 |
| dka-miR399b | TGCCAAAGGAGAATTGCCCGG | 2.627 | 0.010 | 0.002 | −8.037 |
| dka-miR399c | TGCCAAAGGAGAGTTGCCCTA | 6.238 | 2.419 | 0.008 | −1.367 |
| dka-miR399f | TGCCAAAGGAGAATTGCAC | 2.463 | 0.010 | 0.000 | −7.944 |
| dka-miR399h | TGCCAAAGGAGATTTGCCCCG | 4.925 | 1.075 | 0.000 | −2.196 |
| dka-miR399h-3p | TGCCAAAGGAGAATTGCCCTG | 135.275 | 35.474 | 0.000 | −1.931 |
| dka-miR479 | CGTGATATTGGTTCGGCTCATC | 31.192 | 10.481 | 0.000 | −1.573 |
| dka-miR530a | TGCATTTGCACCTGCACCTC | 1.149 | 0.010 | 0.000 | −6.844 |
| dka-miR530b | TGCATTTGCACCTGCACCTT | 7.059 | 0.010 | 0.000 | −9.463 |
| dka-miR530c | TGCATTTGCACCTGCACCTTG | 1.313 | 0.010 | 0.000 | −7.037 |
| dka-miR530d | TGCATTTGCACCTGCACTTTC | 1.970 | 0.010 | 0.000 | −7.622 |
| dka-miR530e | TGCATTTGCACCTGCACTTTA | 1.313 | 0.010 | 0.002 | −7.037 |
| dka-miR530f | TGCATTTGCACCTGCATCTC | 1.970 | 0.010 | 0.002 | −7.622 |
| dka-miR858b | TTCGTTGTCTGTTCGACCTTG | 36.938 | 11.690 | 0.004 | −1.660 |