Table 5.
Exome capture copy number variation and presence/absence variation detected in upland (octoploid) and lowland (tetraploid) individuals
| Genotype | Ploidy | Up-CNV | Down-CNV | PAV |
|---|---|---|---|---|
| A5 (Alamo, lowland) | 4x | 109 | 2432 | 914 |
| AP13(Alamo, lowland) | 4x | NA | NA | NA |
| SG5 (SG5, lowland) | 4x | 101 | 2236 | 1047 |
| W4 (Wabasso, lowland) | 4x | 342 | 1806 | 1113 |
| Car1 (Carthage, upland) | 8x | 186 | 2501 | 1152 |
| P2 (Pathfinder, upland) | 8x | 325 | 1179 | 827 |
| She2 (Shelter, upland) | 8x | 116 | 2398 | 1249 |
| Tr5 (Trailblazer, upland) | 8x | 346 | 1307 | 961 |
| Tetraploid and lowland restricted | 4x | 267 | 2560 | 963 |
| Octoploid and upland restricted | 8x | 469 | 2265 | 1117 |
| Total, unique | 946 | 7227 | 3336 |
Tetraploid restricted indicates copy number variants and presence/absence variants detected only in tetraploid samples, and octoploid restricted indicates copy number variants detected only in octoploid individuals. Total, unique indicates the total number of unique copy number variants and presence/absence variants detected in all seven individuals.