Table 2. EatA sequence conservation in geographically, temporally, and phylogenically disparate isolates.
strain | accession | origin | isolation reported | phenotype | identity1 (%) | Similarity (%) | ref. |
---|---|---|---|---|---|---|---|
H10407 |
Q84GK0.1
|
Bangladesh |
1973 |
cholera-like |
- |
- |
[52] |
Throop D | 2 EMW91712.1 | Dallas, TX | 1976 | cholera-like | 98 | 99 | [36] |
Envira 10/1 | 2 EMX71514.1 | Amazon, Brazil | 1998 | cholera-like | 97 | 98 | [35] |
Juruá 18/11 | 2 EMX58104.1 | Amazon, Brazil | 1998 | cholera-like | 96 | 98 | [35] |
2850750 | 2 EMW01116.1 | Bangladesh | 2008 | cholera-like | 96 | 97 | 5 |
2871950 | 2 EMV49671.1 | Bangladesh | 2008 | cholera-like | 96 | 98 | 5 |
P0305293.1 | 2 EMZ82436.1 | Bangladesh | 2011 | cholera-like | 97 | 98 | 5 |
P0304777.1 | 2 EMX02137.1 | Bangladesh | 2011 | cholera-like | 96 | 97 | 5 |
2720900 | 2 EMX91421.1 | Bangladesh | 2007 | cholera-like | 100 | 100 | 5 |
178900 | 2 ENA71292.1 | Bangladesh | 2010 | cholera-like | 98 | 99 | 5 |
180200 | 2 ENA61350.1 | Bangladesh | 2010 | cholera-like | 96 | 98 | 5 |
2722950 | 2 EMZ73955.1 | Bangladesh | 2007 | mild-self-limited | 98 | 99 | 5 |
tw10598 | 3 AELA00000000.1 | Guinea-Bissau | 1996 | diarrhea4 | 96 | 98 | [49] |
tw10722 | 3 AELB00000000.1 | Guinea-Bissau | 1996 | diarrhea4 | 95 | 98 | [49] |
tw10828 | 3 AELC00000000.1 | Guinea-Bissau | 1996 | diarrhea4 | 95 | 97 | [49] |
tw11681 | 3 AELD00000000.1 | Guinea-Bissau | 1996 | diarrhea4 | 98 | 99 | [49] |
B2C | ETS27975.1 | Vietnam | 1971 | diarrhea4 | 96 | 98 | [62] |
E24377A | YP_001451588.1 | Egypt | 1980s | diarrhea4 | 96 | 97 | [63] |
1based on BLAST-P searches against 1042 residues of predicted passenger domain of H10407.
2sequenced at GSCID (http://gscid.igs.umaryland.edu/wp.php?wp=comparative_genome_analysis_of_enterotoxigenic_e._coli_isolates_from_infections_of_different_clinical_severity)
3open reading frames corresponding to the eatA gene were first assembled from whole genome shotgun sequence contigs for these draft genomes; BLASTP for these homologues was conducted using CLC Main Workbench v6.9.1 and local database of predicted protein sequences derived from translation of assembled contigs from the respective sequencing projects.
4(severity unknown)
5this study