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. 2003 Jan 1;13(1):81–90. doi: 10.1101/gr.731003

Figure 3.

Figure 3.

(A) Inconsistent read pair, the one with the wavy lines over it will break a contig, creating three independent groups that are reassembled on the next iteration of PHRAP. (B) Read pairs are used to extend contigs by adding mates' of reads that should fall near the ends of the contig to the set of reads assembled for that contig on the following PHRAP iteration.