FACS analysis with the well-characterized potentiometric fluorescent dye tetramethylrhodamine methyl ester (TMRM) to quantify the changes of the mitochondrial membrane potential and mitochondrial permeability transition induced by HMGB1. The upper left panel shows experimental procedure, and the upper right panel shows parameters in the following graphs. Non-specific negative control siRNA did not affect TMRM signals, whereas siRNA-A and siRNA-B against HMGB1 substantially reduced a part of transfected HeLa cells. The siRNAs that were used for this analysis were similar to those in
Supplementary Fig S8, where suppression of HMGB1 by these siRNAs was confirmed. The results from three sets of independent transfection experiments indicated that the mitochondrial membrane potential and mitochondrial permeability transition were changed by the deficiency in HMGB1.