Table 2. Structure–activity relationships for carbamide based HDAC inhibitors30 .
|
HDAC isoform inhibition IC50
a
(μM) |
[Brain]/[plasma] and brain free fraction b (%) | ||||
| Compound | R1 group | R2 group | HDAC1 | HDAC2 | HDAC3 | |
| 5 |
|
|
0.059 ± 0.015 | 0.261 ± 0.140 | 0.949 ± 0.034 | nd |
| 6 |
|
|
4.24 ± 0.257 | 3.13 ± 0.492 | 25.0 ± 1.71 | nd |
| 7 |
|
|
0.072 ± 0.029 | 0.086 ± 0.057 | 0.350 ± 0.018 | nd |
| 8 |
|
|
0.020 ± 0.003 | 0.131 ± 0.015 | 0.548 ± 0.162 | nd |
| 9 |
|
|
0.011 ± 0.005 | 0.095 ± 0.061 | 0.635 ± 0.308 | nd |
| BRD2283 |
|
|
0.003 ± 0.002 | 0.054 ± 0.016 | 0.604 ± 0.039 | nd |
| 10 |
|
|
0.021 ± 0.005 | 0.079 ± 0.042 | 1.01 ± 0.16 | nd |
| 11 |
|
|
11.9 ± 1.17 | 13.23 ± 0.45 | >33.33 | nd |
| BRD3349 |
|
|
0.011 ± 0.003 | 0.049 ± 0.005 | 2.78 ± 0.02 | 0.04 |
| BRD4884 |
|
|
0.029 ± 0.012 | 0.062 ± 0.031 | 1.09 ± 0.38 | 1.29 |
| Residence time T 1/2 (min) | ||||||
| 20 | 143 | 257 | 6% | |||
| 12 |
|
|
2.36 ± 0.151 | 1.10 ± 0.019 | >33.33 | nd |
aValues are the mean of a minimum of two experiments. Data are shown as IC50 values in μM ± standard deviation. Compounds were tested in duplicate in a 12-point dose curve with 3-fold serial dilution starting from 33.33 μM. nd = not determined.
bBrain free fraction estimated based on brain tissue binding experiments.