Table 2.
Differential expression of transcripts involved in major secondary metabolite biosynthetic pathways
| Pathway | Pathway ID in KEGG DB | No. of transcripts assigned to pathway | Differentially expressed transcripts (more than 2 fold difference) | No. of unique transcripts | |
|---|---|---|---|---|---|
| Adventitious roots | Leaves | ||||
| Phenylpropanoid biosynthesis | map00940 | 505 | 185 | 104 | 0 |
| Phenylalanine, tyrosine and tryptophan biosynthesis | map00400 | 209 | 49 | 15 | 0 |
| Monoterpenoid biosynthesis | map00902 | 174 | 50 | 23 | 0 |
| Terpenoid backbone biosynthesis | map00900 | 155 | 28 | 22 | 0 |
| Pantothenate and CoA biosynthesis | map00770 | 141 | 52 | 16 | 0 |
| Flavone and flavonol biosynthesis | map00944 | 129 | 57 | 22 | 0 |
| Carotenoid biosynthesis | map00906 | 127 | 47 | 16 | 0 |
| Zeatin biosynthesis | map00908 | 127 | 43 | 26 | 0 |
| Flavonoid biosynthesis | map00944 | 121 | 49 | 15 | 0 |
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 | 103 | 35 | 13 | 1 |
| Isoquinoline alkaloid biosynthesis | map00950 | 101 | 34 | 11 | 0 |
| Tropane, piperidine and pyridine alkaloid biosynthesis | map00960 | 100 | 35 | 12 | 0 |
| Steroid hormone biosynthesis | map00140 | 90 | 33 | 16 | 0 |
| Various types of N-glycan biosynthesis | map00513 | 73 | 10 | 6 | 0 |
| Steroid biosynthesis | map00100 | 70 | 11 | 17 | 0 |
| N-Glycan biosynthesis | map00513 | 61 | 10 | 5 | 0 |
| Folate biosynthesis | map00790 | 59 | 11 | 7 | 0 |
| Sesquiterpenoid and triterpenoid biosynthesis | map00909 | 45 | 15 | 4 | 0 |
| Glucosinolate biosynthesis | map00966 | 43 | 18 | 11 | 0 |
| Diterpenoid biosynthesis | map00904 | 38 | 8 | 14 | 0 |
| Lipopolysaccharide biosynthesis | map00540 | 31 | 8 | 4 | 0 |
| Phosphonate and phosphinate metabolism | map00440 | 28 | 4 | 6 | 0 |
| Other types of O-glycan biosynthesis | map00514 | 11 | 0 | 1 | 0 |
| Isoflavonoid biosynthesis | map00943 | 7 | 5 | 2 | 0 |
| Anthocyanin biosynthesis | map00942 | 6 | 4 | 1 | 0 |