Table 1.
Selected pre-miRNA features
| Classification | Number | Features |
|---|---|---|
| MFE-related | 9 | MFEI12, MFEI22, MFEI33, MFEI43, MFEI54, MFEI64, MFEI75, MFEI85, MFEI95 |
| Sequence-related | 20 | %AA,%AC, etc.2 (16),%G + C2, Avg_mis_num4 Mis_num_begin5, Mis_num_end5 |
| Mfold-related | 6 | dS3, dS/L3, dH3, dH/L3, Tm3, Tm/L3 |
| Base-pair -related | 7 | |A-U|/L3,|C-G|/L3, |G-U|/L3, Avg_BP_Stem3, %(A − U)/n_stems3, %(G − C)/n_stems3 |
| Triple-related | 96 | A(((_S, A((._S, etc.1 (32), A(((_begin_S, A((._begin _S, etc.5 (32), A(((_end _S, A((._end _S, etc.5 (32) |
| RNAfold-related | 14 | dP2, dG2, dD2, dQ2, dF2, zP2, zG2, zD2, zQ2, zF2,NEFE3, Freq3, Diversity3, Diff3 |
1Features extracted in triplet-SVM.
2Features extracted in miPred.
3Features extracted in microPred.
4Features extracted in plantMiRNAPred.
5Features extracted in miPlantPreMat.