Table 1.
Expression of selected genes significantly affected by BM-LOV-HK deletion.
| BME# | Gene | Fold change* | LNN† | Description |
|---|---|---|---|---|
| General stress response | ||||
| BMEI0371 | rpoE1 | −3.8 | 1.00 | RNA polymerase sigma-70 factor |
| BMEI0372 | phyR | −2.4 | 1.00 | Two-component response regulator |
| BMEI0373 | - | −4.2 | 1.00 | Hypothetical protein |
| BMEI0374 | phyK | −5.9 | 1.00 | Sensory transduction histidine kinase |
| BMEI0280 | rpoH2 | −3.0 | 1.00 | RNA polymerase sigma factor |
| Quorum sensing | ||||
| BMEII1116 | vjbR | 2.7 | 1.00 | Quorum sensing regulator protein |
| BMEI1758 | blxR | 5.3 | 1.00 | Quorum sensing regulator protein |
| Type IV secretion (virB) | ||||
| BMEII0025 | virB1 | 3.3 | 1.00 | Lytic transglycosylase |
| BMEII0026 | virB2 | 9.9 | 1.00 | Pilus |
| BMEII0027 | virB3 | 9.4 | 1.00 | Channel protein |
| BMEII0028 | virB4 | 5.4 | 1.00 | ATPase |
| BMEII0029 | virB5 | 7.0 | 1.00 | Attachment mediating protein |
| BMEII0030 | virB6 | 4.1 | 1.00 | IM Channel protein |
| BMEII0031 | virB7 | 2.8 | 1.00 | Channel protein |
| BMEII0032 | virB8 | 3.7 | 1.00 | Channel protein |
| BMEII0033 | virB9 | 3.4 | 1.00 | Channel protein |
| BMEII0034 | virB10 | 3.8 | 1.00 | Channel protein |
| BMEII0035 | virB11 | 4.0 | 1.00 | ATPase |
| BMEII0036 | virB12 | 2.8 | 1.00 | Outer membrane protein |
| Flagella | ||||
| BMEII0150 | fliC | 2.3 | 1.00 | Flagellin |
| BMEII0151 | fliF | 2.4 | 1.00 | M-ring protein |
| BMEII0159 | flgE | 1.9 | 0.89 | Hook protein |
| BMEII0160 | flgK | 1.7 | 0.60 | Hook-associated protein (junction) |
| BMEII0161 | flgL | 2.0 | 0.98 | Hook-associated protein (junction) |
| BMEII0162 | flaF | 1.8 | 0.79 | Biosynthesis regulatory factor |
| BMEII0170 | flgJ | 1.9 | 0.93 | Peptidoglycan hydrolyzing protein |
| BMEII0171 | flgN | 2.0 | 0.98 | Type III secretion chaperone |
| BMEII0172 | fliL | 1.9 | 0.95 | Basal body-associated protein |
| BMEII1085 | flgA | 1.8 | 0.88 | P-ring biosynthesis protein |
| BMEII1086 | flgG | 2.0 | 0.98 | Basal body rod protein |
| BMEII1087 | fliE | 1.8 | 0.83 | Hook-basal body rod protein |
| BMEII1088 | flgC | 2.0 | 0.95 | Basal body rod protein |
| BMEII1089 | flgB | 1.8 | 0.79 | Basal body rod protein |
| BMEII1107 | flgF | 2.5 | 1.00 | Basal body rod protein |
| BMEII1108 | flgF | 2.6 | 1.00 | Basal body rod protein |
| BMEII1110 | fliM | 1.7 | 0.67 | Motor switch protein (C-ring) |
| BMEII1111 | - | 1.9 | 0.94 | Hypothetical protein |
| BMEII1113 | fliG | 1.7 | 0.69 | Motor switch protein |
| BMEII1114 | flhB | 7.0 | 1.00 | Biosynthesis protein - export apparatus |
| BMEII1115 | - | 4.9 | 1.00 | Hypothetical protein |
*Fold Change is ΔBM-LOV-HK/WT for positive fold change and −1/(ΔBM-LOV-HK/WT) for negative fold change.
†LNN value > 0.5 considered significant and calculated using ebarray package for Bioconductor.