Table 1. Mutant Stocks Used in This Study.
| Gene Allele | Maize Gene Name | Arabidopsis Ortholog | Gene Function | Maize Gene ID | WGBS Data | SeqCap Data |
|---|---|---|---|---|---|---|
| zmet2-m1 | Zmet2/Dmt102 | CMT3 | Methyltransferase | GRMZM2G025592 | Yes | Yes |
| zmet2-m2 | Zmet2/Dmt102 | CMT3 | Methyltransferase | GRMZM2G025592 | Yes | Yes |
| zmet5-m1 | Zmet5/Dmt105 | CMT3 | Methyltransferase | GRMZM2G005310 | Yes | yes |
| zmet5-m2 | Zmet5/Dmt105 | CMT3 | Methyltransferase | GRMZM2G005310 | No | yes |
| zmet7-m1 | Zmet7/Dmt107 | DRM1/2 | Methyltransferase | GRMZM2G137366 | Yes | Yes |
| zmet7-m2 | Zmet7/Dmt107 | DRM1/2 | Methyltransferase | GRMZM2G137366 | Yes | No |
| zmet7-T03 | Zmet7/Dmt107 | DRM1/2 | Methyltransferase | GRMZM2G137366 | Yes | No |
| chr101-m1 | Chr101 | DDM1 | Chromatin remodeler | GRMZM2G177165 | Yes | Yes |
| chr101-m3 | Chr101 | DDM1 | Chromatin remodeler | GRMZM2G177165 | Yes | Yes |
| chr106-m1 | Chr106 | DDM1 | Chromatin remodeler | GRMZM2G071025 | Yes | Yes |
| chr106-T11 | Chr106 | DDM1 | Chromatin remodeler | GRMZM2G071025 | Yes | Yes |
| vim102-1 | Vim102 | VIM1 | Methylcytosine binding protein | GRMZM2G339151 | Yes | Yes |
| mop1 | Mop1 | RDR2 | RNA-dependent RNA polymerase | GRMZM2G042443 | Yes | Yes |
| mop2 | Mop2 | NRPD2/E2 | RNA polymerase D2/E2 | GRMZM2G054225 | No | Yes |
| mop3 | Mop3 | NRPD1 | RNA polymerase D1 | GRMZM2G007681 | No | Yes |
| tgr1 | Tgr1 | Unknown | Unknown | Unknown | Yes | Yes |
| tgr9 | Tgr9 | Unknown | Unknown | Unknown | Yes | Yes |