Table 1.

Primers used for identification and real-time PCR.

Gene	Forward primer (5′-3′)	Reverse primer (5′-3′)	References
16S rRNA	CGGGGAGGAAGGTGTTGTG	GAGCCCGGGGATTTCACATC	Chang et al., 1997
hilA	CGCTGGCAGAATGCTACCTC	AGCCCCAGTAATCCTAAAGCTTG	Brunelle et al., 2011
prgH	GCTCTTTCTTGCTCATCGT	ATCTCTATCTGGCTGGATACCT	Brunelle et al., 2013
invF	ATGTGAAGGCGATGAGTAAC	GCTGCTGAATAGTGTAGAAGG	Brunelle et al., 2013
floR	TTCGGTCAAGGTTCTGGACCAGTT	TGGACATAAGCCTGTTCGGTTGGT	Golding et al., 2007
cat	GCAAGATGTGGCGTGTTAC	GGGGGCGAAGAAGTTGTC	This study
cml	CGGCTGAAGTCTTTCTGG	CGACCTGCGTAAATGTCAC	This study
aadA2	ATGACCTTATGGAGGCTTCGGCTT	TGCCATTCTCCAAATTGCAGCTCG	Golding et al., 2007
strA	GGTAAGAAGTCGGGATTGAC	CACAGCCTATCGGTTGATC	This study
strB	CGCCATACCAGATAGTCG	CTTTTCCAGCCTCGTTTG	This study
blaCMY	ATGATGAAAAAATCGTTATGC	TTGTAGCTTTTCAAGAATGCGC	Eckert et al., 2004
blaOXA	ATGAAAAACACAATACATATC	AATTTAGTGTGTTTAGAATGG	Weill et al., 2006
blaPSE	CGGCGGGATGGAACATT	GCTGTAATACTCCGAGCACCAA	Golding et al., 2007
blaTEM	ATGAGTATTCAACATTTCCG	CCAATGCTTAATCAGTGAGG	Eckert et al., 2004
blaSHV	TTATCTCCCTGTTAGCCACC	GATTTGCTGATTTCGCTCGG	Weill et al., 2006
tetA	GCTACATCCTGCTTGCCTTC	CATAGATCGCCGTGAAGAGG	Weir et al., 2008
tetC	GCATAAACCAGCCATTGAG	GGTAAACGCCATTGTCAG	Brunelle et al., 2013
tetD	GATGTGGCGAATAAAGCG	CCAGTGTGACCCCTGTTAC	Brunelle et al., 2013
tetG	CCTTGCAGGCAATGCTCTCAAACA	AGATTGGTGAGGCTCGTTAGCGTT	Golding et al., 2007