Table 1. Kinetic Parameters for Activation of ScTIM by Oxydianions (Scheme 2) and Derived Parameters for the Binding of Dianions to [E·S]‡ (Scheme 5)a.
dianion | (kcat/Km)E (M–1 s–1)b | KX (mM)c,d | (kcat/Km)E·X (M–1 s–1)c,e | (kcat/Km)E·X/KX (M–2 s–1) | (K‡)X (M)f | RT ln(K‡)X (kcal/mol)g |
---|---|---|---|---|---|---|
none | 0.062 | |||||
HPO32– | 18 ± 3 | 48 ± 4 | 2700 | 2.3 × 10–5 | –6.3 | |
FPO32– | 5.1 ± 1.3 | 10 ± 0.7 | 2000 | 3.1 × 10–5 | –6.1 | |
HOPO32– | n.dh | n.dh | 70 ± 10i | 8.8 × 10–4 | –4.2 | |
SO42– | 21 ± 4 | 2.8 ± 0.3 | 130 | 4.7 × 10–4 | –4.5 | |
S2O32– | 7 ± 1.0 | 7.3 ± 0.3 | 1200 | 5.2 × 10–5 | –5.8 |
Reactions of 20 mM [1-13C]-GA in D2O at pD 7.0 (20 mM imidazole), 25 °C and I = 0.1 (NaCl). The quoted uncertainty in the kinetic parameters is the standard error determined for the nonlinear least-squares fits of these data.
Second-order rate constant for the ScTIM-catalyzed reaction of [1-13C]-GA determined for a reaction in the absence of dianion activator.
Dissociation constant for release of the oxydianion from ScTIM.
Second-order rate constant for the reactions of [1-13C]-GA catalyzed by the enzyme–oxydianion complex (Scheme 2).
Dissociation constant for release of the oxydianion from the transition state complex, calculated using eq 6, derived for Scheme 5.
Intrinsic Gibbs dianion binding free energy.
Not determined: the plot for activation by HOPO32– (Figure 3) is linear through [HOPO32–] = 14 mM.
The slope of the linear correlation from Figure 3.