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. 2015 Jan 2;137(3):1372–1382. doi: 10.1021/ja5123842

Table 1. Kinetic Parameters for Activation of ScTIM by Oxydianions (Scheme 2) and Derived Parameters for the Binding of Dianions to [E·S] (Scheme 5)a.

dianion (kcat/Km)E (M–1 s–1)b KX (mM)c,d (kcat/Km)E·X (M–1 s–1)c,e (kcat/Km)E·X/KX (M–2 s–1) (K)X (M)f RT ln(K)X (kcal/mol)g
none 0.062          
HPO32–   18 ± 3 48 ± 4 2700 2.3 × 10–5 –6.3
FPO32–   5.1 ± 1.3 10 ± 0.7 2000 3.1 × 10–5 –6.1
HOPO32–   n.dh n.dh 70 ± 10i 8.8 × 10–4 –4.2
SO42–   21 ± 4 2.8 ± 0.3 130 4.7 × 10–4 –4.5
S2O32–   7 ± 1.0 7.3 ± 0.3 1200 5.2 × 10–5 –5.8
a

Reactions of 20 mM [1-13C]-GA in D2O at pD 7.0 (20 mM imidazole), 25 °C and I = 0.1 (NaCl). The quoted uncertainty in the kinetic parameters is the standard error determined for the nonlinear least-squares fits of these data.

b

Second-order rate constant for the ScTIM-catalyzed reaction of [1-13C]-GA determined for a reaction in the absence of dianion activator.

c

Kinetic parameter determined from the fit of data shown in Figure 3 to eq 3.

d

Dissociation constant for release of the oxydianion from ScTIM.

e

Second-order rate constant for the reactions of [1-13C]-GA catalyzed by the enzyme–oxydianion complex (Scheme 2).

f

Dissociation constant for release of the oxydianion from the transition state complex, calculated using eq 6, derived for Scheme 5.

g

Intrinsic Gibbs dianion binding free energy.

h

Not determined: the plot for activation by HOPO32– (Figure 3) is linear through [HOPO32–] = 14 mM.

i

The slope of the linear correlation from Figure 3.