Table 3. SSR markers associated with the same yield component traits in different environments using the MLM method.

Trait	Marker	Chr.	GLM a	P1 b	P2 b	P3 b	P4 b
NB	BNL3261	A12	4	0.0011 m F P			0.0006 M F P
	BNL3590	D3	4		0.0077 m f		0.0009 M F P
	NAU2581	UL	3			0.0000 M F P	0.0037 m f
	NAU3522	A13	3	0.0013 m F P		0.0009 M F P
	cgr6807+	D1	2	0.0037 m f			0.0029 m P
	cgr6356	A1	2	0.0043 m f 0	0.0057 m f
	NAU2985	D1	4		0.0065 m f	0.0161 f	0.0030 m f
	NAU3861	D13	2	0.0381 f		0.0075 m f	0.0098 m f
BW	dPL0542	D1	3	0.0440		0.0005 M F P
	NAU1190	A3	2	0.0425	0.0011 m F		0.0469
	NAU2859	D3	2		0.0470	0.0003 M F
LP	CIR307	D1	4	0.0360 f	0.0062 m f P
	BNL3590* +	A2	4		0.0096 m P	0.0148 m f
	JESPR197	A5	4			0.0011 m F P	0.0036 m f
	NAU2581	UL	3			0.0032 m f P	0.0227 f
	NAU3053	D7	2	0.0002 M F	0.0004 M F	0.0037 m f	0.0039 m f
	NAU3206	A6	3	0.0147 f	0.0028 m f P	0.0193 f	0.0030 m f P
	NAU3293	D12	4	0.0216 f		0.0008 M F P	0.0114 f
	NAU3308* +	D2	2			0.0050 m f	0.0079 m f
	NAU3522	A13	2	0.0217 f	0.0483		0.0021 m f P
	NAU3778	A12	2	0.0017 m F			0.0186 f
	NAU3995+	A3	2			0.0169 f	0.0018 m F
	BNL1395* +	D7	4	0.0346 f P	0.0397 f P
	JESPR204*	D13	3		0.0193 f P	0.0239 f
	NAU862	A3	4	0.0105 f P	0.0426
	BNL1672*	A9	4	0.0099 m f		0.0233 f
	BNL1705	D11	4	0.0099 m f	0.0020 m f
	NAU2251	A12	2	0.0048 m f	0.0267 f

* Linked or associated with the same traits in previous reports;

⁺ Separated from markers that are linked or associated with the same traits described in previous reports at distances of less than 1–2 LD decay cM on the reference map;

^a times repeatedly detected using GLM;

^b p value in the E1, E2, E3 and E4 environments;

^M BF_min strong-to-very strong evidence for association (p < 0.05);

^m BF_min moderate-to-strong evidence for association (p > 0.05–0.13);

^P significant in the GLM test after 1,000 permutations at p < 0.05;

^F significant in the pFDR MLM test at p < 0.05;

^f significant in the pFDR GLM test at p < 0.05.The values formatted in bold were not supported by any evidence other than p value (p < 0.05).