TABLE 3.
Genetic characteristics of representatives from each of the four major subclones of E. coli O157:H7 in the Swedish cattle reservoir
| Isolate | Accession no. | Clade | LSPA-6 | Gene (position) |
Verotoxin(s) | % LII SNP statea | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| tir (255) | fimH (468) | agaF (271) | ECs2357(539) | wrbA | cdtV | ||||||
| 09-BKT048303 | JJOM00000000 | 7 | 223323 | A + 16-bp insert | C | G | C | Intact | − | 2 | 49 |
| 08-BKT061141 | JJOL00000000 | 7 | 213111 | T | C | G | C | Intact | − | 1 + 2 | 21 |
| T1543/06 | JJOK00000000 | 8 | 211111 | T | C | A | T | Intact | − | 2 | 0 |
| 09-BKT002497 | JJOJ00000000 | 5/6 | 211111 | T | A | G | C | Intact | + | 2 | 1 |
a
LII, lineage II.