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. 2014 Dec;52(12):4202–4209. doi: 10.1128/JCM.01105-14

TABLE 5.

Summary of de novo assembly of unmapped reads

Assembly parameter Patient I (5 strains) Patient II (3 strains)
No. of contigs (length ≥ 500, depth ≥ 30) 205 474
Total length (bp) 767,194 1,552,135
N50 (bp) 11,069 7,531
Avg length (bp) 3,742 3,274
No. of predicted genes 163 396