Table. Strains, accession numbers, acronyms, optimal temperatures, and affected hosts on the studied Lagenidium isolates studied, 2011–2012.
Taxonomic name | Strain identification† | Acronym | Primer |
Optimal temperature, °C | Host | ||||
---|---|---|---|---|---|---|---|---|---|
Internal transcriber spacer | CDC42 | COXII | HSP90 | TUB | |||||
L. giganteum | NPI01 | Lgm1 | EF016915 | 0 | 0 | 0 | 0 | 25 | Mosquito larvae |
L. giganteum | ATCC 48336 | Lgm2 | JQ745259 | 0 | 0 | 0 | 0 | 25 | Mosquito larvae |
L. giganteum | ATCC 36492 | Lgm3 | AY151183 | JX985758 | AF086697 | JX999093 | JX999124 | 25 | Mosquito larvae |
Lagenidium sp. | CBS 127533 | Ls1 | HQ395647 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp. A | CBS 126881 | Lspa1 | HQ111460 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp .A | CBS 126885 | Lspa2 | HQ111452 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp .A | CBS 126878 | Lspa3 | HQ111464 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp. A | CBS 126880 | Lspa4 | HQ111459 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp .B | CBS 126882 | Lspb1 | HQ111461 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp. B | CBS 126879 | Lspb2 | HQ111463 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp. B | CBS 126884 | Lspb3 | HQ111450 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp. B | CBS 126883 | Lspb4 | HQ111462 | 0 | 0 | 0 | 0 | ND | Nematodes |
L. callinectes | NJM-0531 | Lc1 | AB285488 | 0 | 0 | 0 | 0 | 25 | Crustacea |
L. callinectes | NJM-8989 | Lc2 | AB285487 | 0 | 0 | 0 | 0 | 25 | Crustacea |
L. callinectes | ATCC 24973 | Lc3 | AB285486 | 0 | 0 | 0 | 0 | 25 | Crustacea |
L. vilelae | CBS 127042 | Lv1 | HQ111455 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp. C | CBS 127284 | Lspc1 | HQ111472 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp. C | CBS 127285 | Lspc2 | HQ111470 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp. C | CBS 127283 | Lscd1 | HQ111471 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp. C | CBS 127276 | Lspc3 | HQ111451 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp. C | CBS 127281 | Lspd2 | HQ111473 | 0 | 0 | 0 | 0 | ND | Nematodes |
Lagenidium sp. D | CBS 127277 | Lspd3 | HQ111454 | 0 | 0 | 0 | 0 | ND | Nematodes |
L. caudatum | CBS 58485 | Lca1 | HQ643136 | 0 | AF290309 | 0 | 0 | 25 | Nematodes |
L. myophilum | NJM-8403 | Lm1 | AB285497 | 0 | AF290311 | 0 | 0 | 20 | Shrimp |
L. humanum | ATCC 76726 | Lh1 | JX970867 | JX985757 | AF290310 | JX999094 | JX999125 | 25 | Saprotrophic |
L. giganteum mammals | ATCCMYA-4933 | Lgp1 | JF919611 | JF919613 | JX970853 | JX999097 | JX999127 | 37°C fast | Dog |
L. giganteum mammals | MTLA-03 | Lgp2 | JX999099 | JF919612 | JX970852 | JX999099 | JX999128 | 37 fast | Dog |
L. giganteum mammals | ATCCMYA-4934 | Lgp3 | JX999096 | JF919613 | JX970854 | JX999096 | JX999126 | 37 slow | Cat |
L. giganteum mammals | ATCCMYA-4935 | Lgp4 | JX999098 | JF919614 | JX970855 | JX999098 | JX999129 | 37 fast | Dog |
L. giganteum mammals | MTLA-10 | Lgp5 | KJ506111 | KJ506076 | KJ506083 | KJ506097 | KJ506111 | 37 fast | Dog |
L. giganteum mammals | MTLA-12 | Lgp6 | KJ506112 | KJ506078 | KJ506084 | KJ506098 | KJ506112 | 37 fast | Dog |
L. giganteum mammals | MTLA-14 | Lgp7 | KJ506113 | KJ506077 | KJ506085 | KJ506099 | KJ506113 | 37 fast | Dog |
L. giganteum mammals | MTLA-15 | Lgp8 | KJ506116 | KJ506081 | KJ506087 | KJ506103 | KJ506116 | 37 fast | Dog |
L. giganteum mammals | MTLA-16 | Lgp9 | KJ506115 | KJ506080 | KJ506086 | KJ506102 | KJ506115 | 37 fast | Dog |
L. giganteum mammals | MTLA-17 | Lgp10 | KJ506117 | KJ506082 | KJ506088 | KJ506101 | KJ506117 | 37 fast | Dog |
L. giganteum mammals | MTLA-18 | Lgp11 | KJ506114 | JX970841 | KJ506089 | KJ506100 | KJ506114 | 37 fast | Dog |
L. ajelloi | ATCCMYA-4936 | La1 | JX970885 | JX970885 | JX970841 | JX999112 | JX999143 | 37 slow | Dog |
L. ajelloi | ATCCMYA-4937 | La2 | JX970884 | JX970884 | JX970842 | JX999113 | JX999144 | 37 slow | Dog |
L. ajelloi | MTLA-19 | La3 | KJ506134 | KJ506070 | KJ506092 | KJ506106 | KJ506120 | 37 slow | Dog |
L. ajelloi | MTLA-20 | La4 | KJ506135 | KJ506071 | KJ506094 | KJ506109 | KJ506124 | 37 slow | Dog |
L. ajelloi | MTLA-21 | La5 | KJ506137 | KJ506073 | KJ506095 | KJ506108 | KJ506122 | 37 slow | Dog |
L. ajelloi | MTLA-22 | La6 | KJ506138 | KJ506069 | KJ506096 | KJ506107 | KJ506123 | 37 slow | Dog |
L. ajelloi | MTLA-23 | La7 | KJ506136 | KJ506072 | KJ506093 | KJ506110 | KJ506121 | 37 slow | Dog |
L. albertoi | ATCCMYA-4932 | Lal8 | JX970870 | JX970838 | JX970838 | JX999115 | JX999142 | 37 slow | Human |
L. vilelae | MTLA-24 | Lv2 | KJ506133 | KJ506075 | KJ506091 | KJ506105 | KJ506119 | 37 slow | Cat |
L. vilelae | MTLA-25-Tissue | Lv3 | KJ506132 | KJ506090 | KJ506090 | KJ506104 | KJ506118 | ND | Cat |
Pythium insidiosum | MTPI-36 | Pi1 | AY486144 | 0 | 0 | 0 | 0 | 37 | Mammals |
P. grandisporangium | ATCC 28295 | Pg1_c | AY151182 | 0 | 0 | 0 | 0 | 25 | Saprotrophic |
P. aphanidermatum | STR-135 | Pa1_a | AY151180 | 0 | 0 | 0 | 0 | 25 | Plants |
P. diliense | STR-66 | Pd1_a | AY151181 | 0 | 0 | 0 | 0 | 25 | Plants |
P. flevoense | STR-W041 | Pf1_b | EU240168 | 0 | 0 | 0 | 0 | 25 | Plants/fish |
P. diclinum | STR-P7824 | Pdi1_b | EF153675 | 0 | 0 | 0 | 0 | 25 | Plants |
P. capillosum | CBS 222–94 | Pc1_b | AY598635 | 0 | 0 | 0 | 0 | 25 | Saprotrophic |
P. sylvaticum | CBS 453.67 | Ps1_f | AY598657 | 0 | 0 | 0 | 0 | 25 | Plants |
P. pleroticum | CBS 776.81 | Pp1_e | AY598642 | 0 | 0 | 0 | 0 | 25 | Plants |
P. iwayamai | CBS 156.64 | Piw1_g | AY598648 | 0 | 0 | 0 | 0 | 25 | Plants |
P. undulatum | CBS 157.69 | Pu1_j | AY598708 | 0 | 0 | 0 | 0 | 25 | Plants |
P. ultimum | CBS 398.51 | Pul1_i | AY598642 | 0 | 0 | 0 | 0 | 25 | Plants |
P. nunn | CBS 808.96 | Pn1_j | AY598709 | 0 | 0 | 0 | 0 | 25 | Fungi |
*ATCC, American Type Culture Collection; CBS, Centraalbureau voor Schimmelcultures; CDC42, cell division cycle 42; COXII, cytochrome oxidase II; HSP90, heat shock protein 90; ND, no data; TUB, tubulin; 0, no DNA sequences available. †MTLA and MTPI strains Biomedical Laboratory Diagnostics, Michigan State University culture collection.