Table 3.
GO terms that were enriched in the most targetted Arabidopsis proteins in our predictions.
| Arabidopsis (TAIR id) | Protein name/gene | Enriched Gene Ontology annotations | Enriched GO terms (corresp. to column 3) |
|---|---|---|---|
| AT1G01030 | B3 domain containing transcription factor | Sequence-specific DNA binding transcription factor activity ; regulation of transcription, DNA-templated | GO:0003700 |
| GO:0006355 | |||
| AT1G06160 | Ethylene-responsive transcription factor ERF094 | DNA binding ; sequence-specific DNA binding transcription factor activity ; regulation of transcription from RNA-polymerase II promoter ; response to jasmonic acid stimulus | GO:0003677 |
| GO:0003700 | |||
| GO:0006355 | |||
| GO:0009753 | |||
| AT1G01060 | Myb-related putative transcription factor | Response to cadmium ion ; response to salt stress ; response to auxin stimulus ; response to cold | GO:0046686 |
| GO:0009651 | |||
| GO:0009733 | |||
| GO:0009409 | |||
| AT1G13180 | Actin-related protein 3 | Actin binding | GO:0003779 |
| AT2G40220 | Ethylene-responsive transcription factor ABI4. Protein glucose insensitive 6 | DNA binding ; response to water deprivation ; positive regulation of transcription, DNA-dependent ; sequence-specific DNA binding | GO:0003677 |
| GO:0009414 | |||
| GO:0045893 | |||
| GO:0043565 | |||
| AT2G46400 | Putative WRKY transcription factor 46 | Response to chitin | GO:0010200 |
| AT1G01080 | Ribonucleoprotein, putative | nucleic acid binding ; RNA binding | GO:0003676 |
| GO:0003723 | |||
| AT3G12110 | Actin-11 | Chloroplast stroma | GO:0009570 |
| AT3G56400 | Probable WRKY transcription factor 70 | Response to salicylic acid stimulus ; sequence-specific DNA binding transcription factor activity ; protein amino acid binding | GO:0009751 |
| GO:0003700 | |||
| GO:0005515 | |||
| AT1G01090 | Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic | Chloroplast stroma | GO:0009570 |
| AT4G09570 | Ca-dependent protein kinase 4 | protein amino acid binding | GO:0005515 |
| AT1G01150 | Homeodomain-like protein with RING-type zinc finger domain | Zinc ion binding ; regulation of transcription, DNA-templated | GO:0008270 |
| GO:0006355 | |||
| AT4G18170 | Probable WRKY transcription factor 28 | Regulation of transcription, DNA-templated ; sequence- specific DNA binding transcription factor activity | GO:0006355 |
| GO:0003700 | |||
| AT1G01160 | GRF1-interacting factor 2 | Protein amino acid binding | GO:0005515 |
| AT1G01200 | Ras-related protein RABA3 | GTP binding; small GTPase mediated signal transduction ; protein transport | GO:0005525 |
| GO:0007264 | |||
| GO:0015031 | |||
| AT5G47220 | Ethylene-responsive transcription factor 2 | Positive regulation of transcription, DNA-dependent ; ethylene mediated signaling pathway | GO:0045893 |
| GO:0009873 | |||
| AT1G01250 | Ethylene-responsive TF ERF023 | Sequence-specific DNA binding transcription factor activity ; nuclear envelope | GO:0003700 |
| GO:0005634 | |||
| AT1G01350 | Zinc finger CCCH domain-containing protein 1 | Nucleic acid binding ; zinc ion binding | GO:0003676 |
| GO:0008270 | |||
| AT1G01370 | Histone H3-like centromeric protein HTR12 | DNA binding ; protein amino acid binding | GO:0003677 |
| GO:0005515 |
To get this list, we performed a GO term enrichment analysis using the FuncAssociate tool (Berriz et al., 2003). We then procure the set of Arabidopsis genes which correspond to the enriched GO terms; i.e., GO terms with a p-value of <0.001. We further filter this set to include only those Arabidopsis genes predicted to interact with at least 3 Salmonella effector proteins. In this table, we show around 20 such Arabidopsis genes for the lack of space. The remaining are available via the download link.