Table 2.

Time-dependent and time-independent gene signatures of MCF-10A-H1047R

Gene set*	No. of genes	0 h		24 h
		NES	P	NES	P
SMID BREAST CANCER BASAL UP†	412	1.58	0	1.45	0
SMID BREAST CANCER BASAL DN‡	391	−1.18	0.043	−1.04	0.333
ONDER CDH1 TARGETS 2 DN§	390	2.5	0	1.79	0
ONDER CDH1 TARGETS 2 UP¶	155	−1.67	0	−2.29	0
REACTOME CELL CYCLE#	355	−1.98	0	1.56	0
KAUFFMANN DNA REPAIR GENESǁ	211	−1.57	0	1.72	0
DANG REGULATED BY MYC UP**	64	−1.75	0	1.05	0.363
DANG REGULATED BY MYC DN††	185	1.36	0.017	−1.91	0
ZWANG CLASS 2 TRANSIENTLY INDUCED BY EGF‡‡	33	1.78	0.01	−2.17	0

^*As listed in the MSigDB (www.broadinstitute.org/gsea/msigdb).

^†Genes up-regulated in the basal subtype of breast cancer (36).

^‡Genes down-regulated in the basal subtype of breast cancer (36).

^§Genes down-regulated after E-cadherin knock-down (38).

^¶Genes up-regulated after E-cadherin knock-down (38).

^#Available at www.reactome.org.

^ǁGenes involved in DNA repair (39).

^**Genes up-regulated by Myc (40).

^††Genes down-regulated by Myc (40).

^‡‡Genes transiently induced by EGF (37).