Table 4. Differentially expressed transcription factor-encoding genes.
| Putative positive regulators | |||||
| At1g01250 | AP2-EREBP family | At3g57670 | C2H2 family | At2g34710 | Homeobox family |
| At1g68550* | AP2-EREBP family | At4g27240 | C2H2 family | At3g18010 | Homeobox family |
| At1g79700 | AP2-EREBP family | At5g03740* | C2H2 family | At4g08150 | Homeobox family |
| At4g16750 | AP2-EREBP family | At5g39550 | C2H2 family | At4g32880 | Homeobox family |
| At4g23750* | AP2-EREBP family | At5g54630 | C2H2 family | At5g46880 | Homeobox family |
| At4g37750 | AP2-EREBP family | At5g57520 | C2H2 family | At5g60690 | Homeobox family |
| At5g11190 | AP2-EREBP family | At1g68200 | C3H family | At1g24260 | MADS family |
| At5g17430 | AP2-EREBP family | At2g44580 | C3H family | At2g03710 | MADS family |
| At5g57390 | AP2-EREBP family | At3g63530 | C3H family | At2g45660 | MADS family |
| At2g46530 | ARF family | At5g45290 | C3H family | At3g30260 | MADS family |
| At1g27660 | bHLH family | At1g54160 | CCAAT-HAP2 family | At4g22950 | MADS family |
| At1g61660 | bHLH family | At3g14020* | CCAAT-HAP2 family | At4g24540* | MADS family |
| At1g68810 | bHLH family | At5g12840 | CCAAT-HAP2 family | At5g15800 | MADS family |
| At2g27230 | bHLH family | At5g06510* | CCAAT-HAP2 family | At5g60910 | MADS family |
| At2g41130 | bHLH family | At1g08970 | CCAAT-HAP5 family | At2g47460 | MYB family |
| At3g06120 | bHLH family | At5g43250 | CCAAT-HAP5 family | At3g61250* | MYB family |
| At3g20640 | bHLH family | At3g04850 | CPP family | At4g32730 | MYB family |
| At5g10570 | bHLH family | At3g22760 | CPP family | At5g15310 | MYB family |
| At5g57150 | bHLH family | At3g22780 | CPP family | At5g49330 | MYB family |
| At5g65640 | bHLH family | At4g14770 | CPP family | At1g54330 | NAC family |
| At2g18160 | bZIP family | At3g01330 | E2F-DP family | At1g62700 | NAC family |
| At1g28050 | C2C2-CO-like family | At3g48160 | E2F-DP family | At3g57150 | NAC family |
| At2g33500 | C2C3-CO-like family | At3g10760 | G2-like | At4g28500 | NAC family |
| At3g50410 | C2C2-Dof family | At3g46640 | G2-like | At2g24630 | REM family |
| At1g08000 | C2C2-Gata family | At5g42630 | G2-like | At1g02065 | SBP family |
| At3g06740 | C2C3-Gata family | At1g50420* | GRAS family | At1g69170 | SBP family |
| At4g16141 | C2C4-Gata family | At1g63100 | GRAS family | At5g43270 | SBP family |
| At5g26930 | C2C5-Gata family | At4g37650 | GRAS family | At4g37490 | TCP family |
| At5g49300 | C2C6-Gata family | At5g41920 | GRAS family | At1g16070 | TUB family |
| At2g45190 | C2C2-YABBY family | At2g22840 | GRF family | At4g39410 | WRKY family |
| At4g00180 | C2C2-YABBY family | At1g30490 | Homeobox family | At1g75240 | ZF-HD family |
| At1g75710 | C2H2 family | At1g46480 | Homeobox family | At2g02540 | ZF-HD family |
| At2g29660 | C2H2 family | At1g52150* | Homeobox family | At2g18350 | ZF-HD family |
| At3g12270 | C2H2 family | At1g62990 | Homeobox family | At4g24660 | ZF-HD family |
| At3g14740 | C2H2 family | At1g79840 | Homeobox family | At5g65410 | ZF-HD family |
| At3g44750* | C2H2 family | At2g27990 | Homeobox family | ||
| Putative negative regulators | |||||
| At1g01030 | ABI3VP1 family | At5g50915 | bHLH family | At2g46680 | Homeobox family |
| At1g25560 | ABI3VP1 family | At5g62610 | bHLH family | At3g01220 | Homeobox family |
| At1g03800 | AP2-EREBP family | At5g67060 | bHLH family | At3g61890 | Homeobox family |
| At1g12610* | AP2-EREBP family | At1g08320 | bZIP family | At5g15150 | Homeobox family |
| At1g19210 | AP2-EREBP family | At3g10800 | bZIP family | At5g47370 | Homeobox family |
| At1g46768 | AP2-EREBP family | At1g25440 | C2C2-CO-like family | At4g26170 | HRT family |
| At1g50640 | AP2-EREBP family | At1g49130 | C2C2-CO-like family | At4g36990 | HSF family |
| At1g64380 | AP2-EREBP family | At1g68520 | C2C2-CO-like family | At5g62020 | HSF family |
| At1g74930 | AP2-EREBP family | At1g73870 | C2C2-CO-like family | At1g68320 | MYB family |
| At2g28550 | AP2-EREBP family | At2g24790 | C2C2-CO-like family | At1g52890 | NAC family |
| At2g40340 | AP2-EREBP family | At3g02380 | C2C2-CO-like family | At1g01720 | NAC family |
| At3g11020 | AP2-EREBP family | At4g39070 | C2C2-CO-like family | At1g52880 | NAC family |
| At3g15210 | AP2-EREBP family | At5g15840 | C2C2-CO-like family | At1g69490 | NAC family |
| At3g20310 | AP2-EREBP family | At5g15850 | C2C2-CO-like family | At1g77450 | NAC family |
| At3g54990* | AP2-EREBP family | At5g57660 | C2C2-CO-like family | At2g17040 | NAC family |
| At4g17490 | AP2-EREBP family | At1g29160 | C2C2-Dof family | At4g17980 | NAC family |
| At4g25470 | AP2-EREBP family | At1g51700 | C2C2-Dof family | At4g27410 | NAC family |
| At4g25490 | AP2-EREBP family | At1g64620 | C2C2-Dof family | At4g28530 | NAC family |
| At4g34410* | AP2-EREBP family | At1g69570 | C2C2-Dof family | At5g08790 | NAC family |
| At4g36900 | AP2-EREBP family | At3g21270 | C2C2-Dof family | At5g18270 | NAC family |
| At5g05410 | AP2-EREBP family | At1g27730 | C2H2 family | At5g39610* | NAC family |
| At5g07310 | AP2-EREBP family | At3g19580 | C2H2 family | At5g61430 | NAC family |
| At5g13330 | AP2-EREBP family | At3g49930 | C2H2 family | At5g63790 | NAC family |
| At5g25190* | AP2-EREBP family | At5g12850 | C2H2 family | At1g64530 | NLP family |
| At5g44210 | AP2-EREBP family | At5g04340 | C2H2 family | At1g13260 | RAV family |
| At5g47230 | AP2-EREBP family | At5g67450 | C2H2 family | At1g68840* | RAV family |
| At5g50080 | AP2-EREBP family | At1g26800 | C3H family | At2g36080 | RAV family |
| At5g51190 | AP2-EREBP family | At2g15580 | C3H family | At2g46870* | RAV family |
| At5g51990 | AP2-EREBP family | At3g10910 | C3H family | At3g11580 | RAV family |
| At5g61600 | AP2-EREBP family | At3g58720 | C3H family | At3g25730 | RAV family |
| At5g61890 | AP2-EREBP family | At4g13100 | C3H family | At5g06250 | RAV family |
| At5g64750* | AP2-EREBP family | At1g67910 | CAMTA family | At1g53230 | TCP family |
| At5g20730 | ARF family | At2g13570 | CCAAT-HAP3 family | At2g38250 | Trihelix family |
| At1g76110 | ARID family | At1g68670 | G2-like family | At5g01380 | Trihelix family |
| At1g04880 | ARID family | At2g03500 | G2-like family | At1g29860 | WRKY family |
| At3g48100 | ARR-B family | At3g04030 | G2-like family | At1g62300 | WRKY family |
| At1g09530 | bHLH family | At5g18240 | G2-like family | At1g69310 | WRKY family |
| At1g18400 | bHLH family | At1g07520 | GRAS family | At1g80840* | WRKY family |
| At1g22380 | bHLH family | At1g07530 | GRAS family | At2g23320 | WRKY family |
| At1g26260 | bHLH family | At2g29060 | GRAS family | At2g38470 | WRKY family |
| At1g73830* | bHLH family | At2g37650 | GRAS family | At2g47260 | WRKY family |
| At2g18300 | bHLH family | At4g17230 | GRAS family | At4g04450 | WRKY family |
| At2g20180 | bHLH family | At4g24150 | GRF family | At4g18170 | WRKY family |
| At3g07340 | bHLH family | At5g53660 | GRF family | At4g22070 | WRKY family |
| At3g21330 | bHLH family | At1g26960 | Homeobox family | At4g31800 | WRKY family |
| At4g34530* | bHLH family | At1g69780 | Homeobox family | At5g26170 | WRKY family |
| At4g36540 | bHLH family | At2g44910 | Homeobox family | At5g46350* | WRKY family |
Ha-AS = Haloxylon ammodendron assimilating shoots, Ha-C = Haloxylon ammodendron cotyledons.
*these genes had the same developmental expression pattern in H. ammodendron and Arabidopsis.