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. Author manuscript; available in PMC: 2016 Mar 1.
Published in final edited form as: J Mol Graph Model. 2014 Dec 5;56:60–73. doi: 10.1016/j.jmgm.2014.11.003

Figure 4.

Figure 4

Root-mean-square-displacement (RMSD) plot for backbone Cα atoms relative to their initial minimized complex structures as a function of time. The plot shows the RMSD of Cα atoms for the singly bound TMC114 to the active site region of the HIV-1 protease (WT-1T) and doubly bound TMC114 to the active site and flap region of HIV-1 protease mutants (V32I-2T and M46L-2T).