Table 2.
Gene | Mean β value | P, after Benjamini-Hochberg correction | |
---|---|---|---|
Cluster 1 | Cluster 2 | ||
Hypermethylated in cluster 2 | |||
ACAN | 0.68 | 0.79 | 0.0035 |
ADAMTS2 | 0.23 | 0.37 | 0.00093 |
ADAMTS7 | 0.41 | 0.55 | 0.0020 |
ADAMTS9 | 0.23 | 0.37 | 0.031 |
ADAMTS10 | 0.55 | 0.66 | 0.0012 |
ADAMTS14 | 0.44 | 0.59 | 0.033 |
BMP2 | 0.28 | 0.56 | 0.00058 |
BMP4 | 0.42 | 0.54 | 0.0096 |
BMP6 | 0.27 | 0.39 | 0.029 |
BMP8A | 0.69 | 0.84 | 0.0069 |
BMPR1A | 0.32 | 0.48 | 0.025 |
COL2A1 | 0.21 | 0.34 | 0.0011 |
GDF5 | 0.66 | 0.79 | 0.000078 |
IL6 | 0.43 | 0.58 | 0.027 |
IL10 | 0.15 | 0.35 | 0.017 |
IL16 | 0.71 | 0.82 | 0.035 |
IL17B | 0.41 | 0.58 | 0.0017 |
MCF2L | 0.26 | 0.48 | 0.0033 |
MMP2 | 0.39 | 0.52 | 0.00028 |
MMP20 | 0.14 | 0.29 | 0.025 |
MMP28 | 0.25 | 0.41 | 0.028 |
SMAD5 | 0.62 | 0.73 | 0.018 |
SMAD7 | 0.44 | 0.59 | 0.00019 |
Hypomethylated in cluster 2 | |||
ACVR1 | 0.83 | 0.71 | 0.033 |
ADAM11 | 0.41 | 0.31 | 0.022 |
ADAM12 | 0.89 | 0.75 | 0.021 |
ADAM19 | 0.82 | 0.66 | 0.046 |
ADAMTS1 | 0.52 | 0.32 | 0.017 |
ADAMTS5 | 0.31 | 0.18 | 0.0026 |
ADAMTS6 | 0.64 | 0.51 | 0.026 |
ADAMTSL2 | 0.58 | 0.40 | 0.016 |
CHST11 | 0.43 | 0.21 | 0.0052 |
ECM1 | 0.55 | 0.39 | 0.00042 |
IL2 | 0.51 | 0.34 | 0.031 |
IL3 | 0.52 | 0.35 | 0.0028 |
IL15 | 0.55 | 0.40 | 0.015 |
IL17C | 0.45 | 0.34 | 0.032 |
IL4R | 0.47 | 0.23 | 0.00035 |
MMP19 | 0.39 | 0.24 | 0.0045 |
SMAD3 | 0.60 | 0.43 | 0.020 |
TGFB1 | 0.34 | 0.22 | 0.032 |
SMAD3 | 0.25 | 0.15 | 0.048 |