Table 3.
Gene | Mean β value | P, after Benjamini-Hochberg correction | |
---|---|---|---|
Cluster 1 | Cluster 2 | ||
Hypermethylated in cluster 2 | |||
ACVR2B | 0.52 | 0.62 | 0.0000021 |
ADAMTSL1 | 0.47 | 0.59 | 0.0039 |
ADAMTSL3 | 0.61 | 0.71 | 0.0000027 |
BMP2 | 0.32 | 0.45 | 0.000026 |
BMP5 | 0.38 | 0.51 | 0.0000055 |
COL2A1 | 0.31 | 0.44 | 0.00000000016 |
COL6A3 | 0.18 | 0.29 | 0.00000033 |
FGF1 | 0.24 | 0.36 | 0.0000013 |
IL10 | 0.14 | 0.25 | 0.000021 |
IL16 | 0.44 | 0.58 | 0.000000016 |
IL18 | 0.29 | 0.41 | 0.00020 |
IL19 | 0.39 | 0.49 | 0.000046 |
MMP28 | 0.45 | 0.56 | 0.000000064 |
MTOR | 0.24 | 0.38 | 0.0000034 |
SMAD2 | 0.46 | 0.58 | 0.00000011 |
SMAD7 | 0.19 | 0.29 | 0.000020 |
TGFB1 | 0.48 | 0.62 | 0.00000096 |
TGFB2 | 0.39 | 0.51 | 0.00088 |
Hypomethylated in cluster 2 | |||
ACVR1 | 0.78 | 0.67 | 0.0000000081 |
ADAM12 | 0.84 | 0.74 | 0.000000011 |
ADAM32 | 0.77 | 0.65 | 0.000016 |
ADAMTS10 | 0.70 | 0.51 | 0.00000000066 |
ADAMTS12 | 0.54 | 0.44 | 0.00057 |
CHST11 | 0.75 | 0.64 | 0.00000021 |
IL2 | 0.50 | 0.39 | 0.00070 |
IL4R | 0.42 | 0.27 | 0.000000000078 |
IL6R | 0.63 | 0.49 | 0.000084 |
MMP19 | 0.37 | 0.26 | 0.000000010 |
RUNX1 | 0.65 | 0.46 | 0.000000037 |
RUNX2 | 0.69 | 0.55 | 0.000011 |
RUNX3 | 0.71 | 0.59 | 0.0000034 |
SMAD3 | 0.63 | 0.48 | 0.0000000020 |
TGFBR2 | 0.67 | 0.48 | 0.0000000025 |
TGFBR3 | 0.56 | 0.41 | 0.0000000023 |
TIMP2 | 0.87 | 0.76 | 0.000011 |