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The effects of population, chromosome and SNP marker interval on linkage disequilibrium (r2).
| Factor | DF | SS | MS | F-value | P-value |
|---|---|---|---|---|---|
| Population | 6 | 4363.4 | 727.23 | 1,892,555 | *** |
| Chromosome | 27 | 629.76 | 23.32 | 606.98 | *** |
| SNP Distance | 1 | 954.77 | 954.77 | 24,846.4 | *** |
| Population x chromosome | 162 | 734.08 | 4.53 | 117.92 | *** |
p < 0.0001.
