Table 1. PAML analysis of FTO.
Model | Parameter Estimates | In L | LRT | |||
---|---|---|---|---|---|---|
Models | 2Δl | d.f. | p-value | |||
M0 | ω0 = 0.1616 | −1462.43 | M0 vs. free-ratio | 63.74 | 66 | 0.58 |
free-ratio | variable | −1430.56 | ||||
M3 | p0 = 0.40765, p1 = 0.39476, p2 = 0.19759, ω0 = 0.00264. ω1 = 0.12330, ω2 = 0.90116 | −1365.70 | M0 vs. M3 | 193.47 | 4 | < 0.001 |
M1a | p0 = 0.79894, p1 = 0.20106, ω0 = 0.05695, ω1 = 1.00000 | −1378.39 | M1a vs. M2a | 0.61 | 2 | 0.74 |
M2a | p0 = 0.79860, p1 = 0.16914, p2 = 0.03227, ω0 = 0.06053, ω1 = 1.00000, ω2 = 1.90635 | −1378.09 | ||||
M7 | p = 0.21277, q = 0.75616 | −1367.96 | M7 vs. M8 | 3.71 | 2 | 0.22 |
M8 | p0 = 0.94790, p = 0.26173, q = 1.37577 (p1 = 0.05210), w = 1.63117 | −1366.10 |
All values computed under default settings. InL: log likelihood, LRT = likelihood ratio test to detect positive selection, d.f. = degrees of freedom.