Table 1.
Datasets used for the copy number (CN), gene expression (Exp) and microRNA expression (miR) downloaded from Gene Expression Omnibus (GEO).
| Tumor type | GEO | Platform | Data | References |
|---|---|---|---|---|
| Breast | GSE22133 | SWEGENE_BAC_33K_Full | CN | Jönsson et al., 2012 |
| Melanoma | GSE45354 | Agilent-021924 SurePrint G3 Human CGH Microarray 8 × 60 K | CN | |
| Lung | GSE29065 | SWEGENE_BAC_32K_Full | CN | Staaf et al., 2013 |
| Wilms | GSE28397 | Custom Agilent 2 × 105 K Human Genomic microarray | CN | |
| Breast | GSE22820 | Agilent-014850 Whole Human Genome Microarray 4x44K G4112F | Exp | Liu et al., 2011 |
| Melanoma | GSE46517 | Affy metrix U133A microarray chip | Exp | Kabbarah et al., 2010 |
| Lung | GSE19804 | Affy metrix Human Genome U133 Plus 2.0 Array | Exp | Lu et al., 2010 |
| Wilms | GSE4530 | Homo sapiens 4.8K 02-01 amplified cDN A | Exp | |
| Breast | GSE48088 | [miRNA-2_0] Affy metrix Multispecies miRNA-2_0 Array | miR | Peña-Chilet et al., 2014 |
| Melanoma | GSE35579 | CRUK/Melton lab-Human melanoma-71 -v2 -microRN A expression | miR | Xu et al., 2012 |
| Lung | GSE51855 | Agilent-015508 Human miRNA Microarray | miR | Arima et al., 2014 |
| Wilms | GSE38419 | Febit Homo Sapiens miRBase 13.0 | miR | Schmitt et al., 2012 |