TABLE 6.
Non-insertion/deletion-probe and insertion/deletion probe-binding proteins
| MS/MS view: identified proteins | Symbol | Molecular mass | Taxonomy | Biological regulation | Binding | Molecular Function | Transcription Regulator Activity | Peptide hit score (non-indel)a | Peptide hit score (indel) |
|---|---|---|---|---|---|---|---|---|---|
| kDa | |||||||||
| Heterogeneous nuclear ribonucleoprotein A/B | HNRPAB | 31 | M. musculus | Regulation of transcription, DNA-dependent | Nucleic acid binding | Transcription factor activity | Transcription factor activity | 25 | 24 |
| Short stature homeobox protein 2 | SHOX2 | 35 | M. musculus | Positive regulation of transcription from RNA polymerase II promoter | DNA binding | Transcription factor activity | Transcription factor activity | 2 | 1 |
| Homeobox protein cut-like 1 | CUX1 | 166 | M. musculus | Negative regulation of transcription from RNA polymerase II promoter | Chromatin binding | Transcription factor activity | Transcription factor activity | 6 | 1 |
| Probable ATP-dependent RNA helicase DDX5 | DDX5 | 69 | M. musculus | Regulation of alternative nuclear mRNA splicing, via spliceosome | Nucleic acid binding | Transcription coactivator activity | Transcription cofactor activity | 14 | 36 |
| ATP-dependent RNA helicase DDX1 | DDX1 | 83 | M. musculus | Regulation of transcription, DNA-dependent | Chromatin binding | Transcription cofactor activity | Transcription cofactor activity | 28 | 12 |
| Mediator of RNA polymerase II transcription subunit 24 | MED24 | 110 | M. musculus | Stem cell maintenance | Thyroid hormone receptor binding | Receptor activity | Transcription cofactor activity | 1 | 1 |
| RNA-binding protein 39 | RBM39 | 59 | M. musculus | Regulation of transcription, DNA-dependent | Nucleic acid binding | Transcription coactivator activity | Transcription coactivator activity | 10 | 9 |
| Junction-mediating and -regulatory protein | JMY | 111 | M. musculus | Positive regulation of transcription factor activity | Protein binding | Transcription coactivator activity | Transcription coactivator activity | 1 | 1 |
| Activated RNA polymerase II transcriptional coactivator p15 | TCP4 | 14 | M. musculus | Regulation of transcription from RNA polymerase II promoter | DNA binding | Transcription coactivator activity | Transcription coactivator activity | 1 | 2 |
| Probable ATP-dependent RNA helicase DDX17 | DDX17 | 72 | M. musculus | Regulation of transcription, DNA-dependent | Nucleic acid binding | Hydrolase activity | Transcription coactivator activity | 1 | 1 |
a indel, insertion/deletion.