Table II.
Chromosomal locations for the 96 SNPs originally identified for the development of the AIMs panel. The genomic coordinates are based on the rheMac2 assembly. Minor allele frequencies and delta values for the 91 SNPs used for ancestry determination are provided below.
| Indian | Chinese | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SNP | Chromosome | Position | Change | ΔMAF | Minor Allele | Major Allele | MAF | Minor Allele | Major Allele | MAF |
| X28654019.1.D8YOWMI02G4FKQ | 1 | 28654019 | G/T | 0.34 | T | G | 0.19 | G | T | 0.46 |
| X35009123.1.D8YOWMI02GFCBO | 1 | 35009123 | A/G | 0.25 | A | G | 0.28 | A | G | 0.04 |
| LRP8:647C | 1 | 56125158 | C/T | 0.27 | C | T | 0.29 | C | T | 0.02 |
| X74753921.1.D8YOWMI01A81XP | 1 | 74753921 | G/T | 0.39 | T | G | 0.42 | T | G | 0.02 |
| AK53266 | 1 | 80406471 | A/G | 0.33 | G | A | 0.36 | G | A | 0.04 |
| X133878311.1.D8YOWMI02H3OT4 | 1 | 133878311 | A/T | 0.33 | A | T | 0.01 | A | T | 0.34 |
| TLR5:389T | 1 | 147143765 | C/T | 0.31 | T | C | 0.39 | T | C | 0.09 |
| CR2193 | 1 | 162907848 | A/G | 0.27 | A | G | 0.01 | A | G | 0.28 |
| GLUL3670 | 1 | 188288891 | A/T | 0.47 | T | A | 0.05 | A | T | 0.49 |
| X189341999.1.D8YOWMI01ALA6J | 1 | 189341999 | C/T | 0.28 | T | C | 0.32 | C | T | 0.40 |
| XCL1:320C | 1 | 198313836 | C/T | 0.24 | C | T | 0.26 | C | T | 0.02 |
| CHRM32590 | 1 | 217281301 | C/T | 0.39 | T | C | 0.44 | T | C | 0.05 |
| TARSH3441 | 2 | 20931497 | C/T | 0.43 | T | 0.00 | C | T | 0.43 | |
| X27827510.2.D8YOWMI01BI0G3 | 2 | 27827510 | A/G | 0.39 | A | G | 0.42 | G | A | 0.19 |
| CD471555 | 2 | 28185807 | C/T | 0.32 | T | C | 0.16 | T | C | 0.49 |
| TTLL33375 | 2 | 51156234 | C/T | 0.25 | C | T | 0.26 | C | T | 0.01 |
| BCHE:76G | 2 | 121586169 | C/G | 0.25 | G | C | 0.28 | G | C | 0.04 |
| X135860354.2.D8YOWMI01BBML4 | 2 | 135860354 | C/T | 0.32 | C | T | 0.24 | T | C | 0.44 |
| X138464766.2.D8YOWMI02GMF29 | 2 | 138464766 | C/T | 0.40 | T | C | 0.35 | C | T | 0.24 |
| X149899985.2.D8YOWMI01A7OV1 | 2 | 149899985 | A/G | 0.19 | A | G | 0.41 | A | G | 0.22 |
| CCR4:420C | 2 | 175430090 | A/C | 0.24 | C | A | 0.01 | C | A | 0.26 |
| ADIPOQ3282 | 2 | 179211380 | C/G | 0.38 | G | C | 0.23 | C | G | 0.39 |
| ITGB2:413G | 3 | 1814133 | A/G | 0.53 | G | A | 0.09 | A | G | 0.38 |
| X86532773.3.D8YOWMI02JDS52 | 3 | 86532773 | A/G | 0.32 | G | A | 0.31 | A | G | 0.37 |
| IL62404 | 3 | 103513696 | A/G | 0.55 | A | G | 0.41 | G | A | 0.04 |
| X138181005.3.D8YOWMI01BKZ5G | 3 | 138181005 | A/T | 0.37 | T | A | 0.45 | T | A | 0.09 |
| X167559647.3.D8YOWMI02H5ZKN | 3 | 167559647 | A/G | 0.36 | G | A | 0.39 | G | A | 0.04 |
| ALDH5A12101 | 4 | 24520863 | A/C | 0.42 | A | C | 0.07 | A | C | 0.49 |
| CDKN1A1416 | 4 | 36438276 | A/G | 0.31 | A | G | 0.34 | A | G | 0.02 |
| X60611841.4.D8YOWMI01D27HH | 4 | 60611841 | A/C | 0.33 | A | C | 0.35 | A | C | 0.02 |
| WFS12271 | 5 | 2511912 | A/G | 0.30 | A | G | 0.31 | A | G | 0.01 |
| CHRNA93449 | 5 | 35384836 | A/G | 0.39 | G | A | 0.33 | A | G | 0.28 |
| X123375995.5.D8YOWMI02IVQDH | 5 | 123375995 | A/G | 0.25 | A | G | 0.27 | A | G | 0.01 |
| ABCE12593 | 5 | 137306033 | A/T | 0.32 | T | A | 0.02 | T | A | 0.34 |
| X11634432.6.D8YOWMI01CE37I | 6 | 11634432 | C/T | 0.39 | T | C | 0.19 | C | T | 0.41 |
| X19209816.6.D8YOWMI01EIA7V | 6 | 19209816 | A/G | 0.35 | G | A | 0.04 | G | A | 0.39 |
| X119189982.6.D8YOWMI01EM0A3 | 6 | 119189982 | A/G | 0.52 | G | A | 0.34 | A | G | 0.15 |
| X145283831.6.D8YOWMI02I6ST3 | 6 | 145283831 | G/T | 0.22 | G | T | 0.17 | G | T | 0.39 |
| CD74358 | 6 | 146876592 | C/T | 0.29 | C | T | 0.30 | C | T | 0.01 |
| CHRM5144 | 7 | 12206127 | C/T | 0.25 | T | C | 0.29 | T | C | 0.04 |
| X47713241.7.D8YOWMI01A7MWI | 7 | 47713241 | A/G | 0.27 | A | G | 0.30 | A | G | 0.04 |
| X52102599.7.D8YOWMI01CWETE | 7 | 52102599 | C/G | 0.39 | C | G | 0.41 | C | G | 0.02 |
| X73733494.7.D8YOWMI02IY81A | 7 | 73733494 | A/G | 0.32 | G | A | 0.42 | A | G | 0.26 |
| APEX11216 | 7 | 83159550 | A/G | 0.34 | A | G | 0.39 | A | G | 0.04 |
| TRAF31704 | 7 | 166139737 | C/G | 0.32 | G | C | 0.40 | G | C | 0.07 |
| X34958656.8.D8YOWMI01A87RR | 8 | 34958656 | A/G | 0.09 | A | G | 0.38 | A | G | 0.29 |
| STAR:522G | 8 | 38598828 | G/T | 0.40 | G | T | 0.41 | G | T | 0.01 |
| X62326623.8.D8YOWMI01BDLZK | 8 | 62326623 | A/G | 0.39 | G | A | 0.31 | A | G | 0.29 |
| X82509260.9.D8YOWMI02GPQPE | 9 | 82509260 | A/G | 0.29 | A | G | 0.33 | G | A | 0.37 |
| X101742820.9.D8YOWMI01BH8Y8 | 9 | 101742820 | C/G | 0.57 | G | C | 0.39 | C | G | 0.04 |
| X122398406.9.D8YOWMI01EH54Y | 9 | 122398406 | C/T | 0.31 | T | C | 0.01 | T | C | 0.32 |
| SPO113501 | 10 | 7190042 | C/G | 0.45 | G | C | 0.30 | C | G | 0.26 |
| X41420257.10.D8YOWMI01DBC16 | 10 | 41420257 | A/T | 0.40 | A | T | 0.46 | A | T | 0.06 |
| SNAP252454 | 10 | 43536876 | A/G | 0.26 | G | A | 0.29 | G | A | 0.04 |
| X2063897.11.D8YOWMI02IKCMS | 11 | 2063897 | A/G | 0.29 | A | G | 0.09 | A | G | 0.38 |
| CD43558 | 11 | 7001554 | C/T | 0.58 | C | T | 0.34 | T | C | 0.07 |
| STK38L3112 | 11 | 27621826 | C/T | 0.28 | C | T | 0.35 | C | T | 0.07 |
| STK38L3391 | 11 | 27622105 | A/G | 0.29 | A | G | 0.34 | A | G | 0.05 |
| X122225487.11.D8YOWMI02G3O7L | 11 | 122225487 | C/G | 0.26 | G | C | 0.29 | G | C | 0.02 |
| ITGA4:321G | 12 | 45134560 | A/G | 0.53 | G | A | 0.02 | A | G | 0.45 |
| X31733062.13.D8YOWMI02JXLV2 | 13 | 31733062 | A/G | 0.41 | A | G | 0.44 | A | G | 0.02 |
| X98825742.13.D8YOWMI01D4G8Q | 13 | 98825742 | C/T | 0.26 | T | C | 0.00 | T | C | 0.27 |
| INHBB:131T | 13 | 126574228 | C/T | 0.27 | T | C | 0.33 | T | C | 0.06 |
| FJX13286 | 14 | 36208486 | C/T | 0.69 | C | T | 0.01 | T | C | 0.29 |
| CD44:471C | 14 | 36608996 | C/T | 0.29 | C | T | 0.01 | C | T | 0.30 |
| X65705967.14.D8YOWMI01DDMKZ | 14 | 65705967 | A/G | 0.36 | A | G | 0.39 | A | G | 0.02 |
| X100225126.14.D8YOWMI02JGR1F | 14 | 100225126 | C/T | 0.39 | C | T | 0.40 | C | T | 0.01 |
| X7707542.15.D8YOWMI02GFL0I | 15 | 7707542 | C/T | 0.34 | T | C | 0.37 | T | C | 0.04 |
| TLR4:703C | 15 | 18363421 | C/T | 0.33 | C | T | 0.01 | C | T | 0.34 |
| ASTN23424 | 15 | 19658319 | A/G | 0.31 | G | A | 0.01 | G | A | 0.32 |
| X24174624.15.D8YOWMI02G1031 | 15 | 24174624 | A/G | 0.29 | A | G | 0.31 | A | G | 0.02 |
| DDX581136 | 15 | 44683588 | A/G | 0.33 | G | A | 0.01 | G | A | 0.33 |
| X64630215.15.D8YOWMI02FJRC7 | 15 | 64630215 | A/G | 0.43 | A | G | 0.16 | G | A | 0.41 |
| X80445623.15.D8YOWMI02I3FAC | 15 | 80445623 | A/G | 0.31 | A | G | 0.33 | A | G | 0.02 |
| FBXW103174 | 16 | 15297924 | A/G | 0.38 | A | G | 0.40 | A | G | 0.02 |
| CCL8:516A | 16 | 29606160 | A/G | 0.43 | A | G | 0.46 | A | G | 0.02 |
| CCL5:690C | 16 | 31144359 | A/C | 0.33 | C | A | 0.01 | C | A | 0.34 |
| X50387595.16.D8YOWMI01AOJ7S | 16 | 50387595 | A/G | 0.50 | A | G | 0.04 | G | A | 0.46 |
| PYY:151C | 16 | 54029444 | C/T | 0.25 | C | T | 0.27 | C | T | 0.02 |
| X21413256.17.D8YOWMI02G62LU | 17 | 21413256 | A/T | 0.43 | T | A | 0.29 | A | T | 0.28 |
| HTR2A1425 | 17 | 25714351 | C/G | 0.56 | C | G | 0.42 | G | C | 0.03 |
| HTR2A1120 | 17 | 25714656 | A/G | 0.60 | A | G | 0.04 | G | A | 0.36 |
| X8046984.18.D8YOWMI02G8JPN | 18 | 8046984 | C/T | 0.38 | T | C | 0.07 | T | C | 0.45 |
| X15112147.18.D8YOWMI02H9T1B | 18 | 15112147 | C/T | 0.34 | T | C | 0.37 | T | C | 0.03 |
| X29194447.18.D8YOWMI02I1NC9 | 18 | 29194447 | A/G | 0.32 | A | G | 0.35 | A | G | 0.02 |
| X37863883.18.D8YOWMI02GJMMQ | 18 | 37863883 | A/C | 0.34 | C | A | 0.25 | A | C | 0.41 |
| X59111711.18.D8YOWMI01CKKVH | 18 | 59111711 | C/T | 0.41 | T | C | 0.37 | C | T | 0.22 |
| X39470934.19.D8YOWMI02H8KAL | 19 | 39470934 | A/G | 0.25 | A | G | 0.26 | A | G | 0.01 |
| SLC6A22495 | 20 | 53920793 | A/C | 0.38 | A | C | 0.42 | A | C | 0.04 |
| X63419598.20.D8YOWMI01CXU1A | 20 | 63419598 | A/G | 0.31 | G | A | 0.24 | A | G | 0.45 |
| GAN2690 | 20 | 79486479 | C/G | 0.33 | C | G | 0.05 | C | G | 0.38 |
| SNPs that were eliminated from the AIMs panel | ||||||||||
| CD40LG:738G | X | 286214 | ||||||||
| GREM13811 | 7 | 170922 | ||||||||
| ZAP1283210 | 7 | 136681838 | ||||||||
| MAOA:116G | X | 811542 | ||||||||
| CXCL123173 | 9 | 1392538 | ||||||||