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. 2015 Feb 6;10(2):e0116547. doi: 10.1371/journal.pone.0116547

Table 1. Primers for amplification of the complete envelope gene of JEV genotype V.

Primer Sequence (5′-3′) Position Polarity Size (bp)
69F TGCAAACCCACGGAGAA 763–779 Forward 501
550R GCCTTGCTTGCAGACATAG 1262-1244 Reverse
373F CCTCACTATCATGGCGAACGACA 1067–1089 Forward 557
908R CGCGATGGACTAGGAACGACTTA 1623-1601 Reverse
819F AGCTTGGAGATTACGGAGAGGTCA 1513–1536 Forward 572
1370R CTTCGAATTGGCGGTGGATGT 2084-2064 Reverse
1240F TGGTACGGTTGTCATAGAA 1934–1952 Forward 512
1734R CACCTCCTGTAGCAAGAA 2445-2428 Reverse
1622F GGAGCTTTCAGAACCCTTTTTG 2316–2337 Forward 378
1980R CCTGACGGCTTCCCACATTT 2693-2674 Reverse

The nucleotide position was based on the JEV XZ0934 strain (Genotype V, GenBank accession number, JF915894).