Table 1. Primers for amplification of the complete envelope gene of JEV genotype V.
Primer | Sequence (5′-3′) | Position† | Polarity | Size (bp) |
---|---|---|---|---|
69F | TGCAAACCCACGGAGAA | 763–779 | Forward | 501 |
550R | GCCTTGCTTGCAGACATAG | 1262-1244 | Reverse | |
373F | CCTCACTATCATGGCGAACGACA | 1067–1089 | Forward | 557 |
908R | CGCGATGGACTAGGAACGACTTA | 1623-1601 | Reverse | |
819F | AGCTTGGAGATTACGGAGAGGTCA | 1513–1536 | Forward | 572 |
1370R | CTTCGAATTGGCGGTGGATGT | 2084-2064 | Reverse | |
1240F | TGGTACGGTTGTCATAGAA | 1934–1952 | Forward | 512 |
1734R | CACCTCCTGTAGCAAGAA | 2445-2428 | Reverse | |
1622F | GGAGCTTTCAGAACCCTTTTTG | 2316–2337 | Forward | 378 |
1980R | CCTGACGGCTTCCCACATTT | 2693-2674 | Reverse |
† The nucleotide position was based on the JEV XZ0934 strain (Genotype V, GenBank accession number, JF915894).